View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16699_low_3 (Length: 748)
Name: NF16699_low_3
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16699_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 631; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 12 - 731
Target Start/End: Complemental strand, 3528734 - 3528020
Alignment:
| Q |
12 |
atgaatgcaatggtagctgaaggtcttgaaacaatacctttaaaagatgttataacccaattgaagggattagggtttgattgtgttagatacacatggg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3528734 |
atgaatgcaatggtagctgaaggtcttgaaacaatacctttaaaagatattataacccaattgaagggattagggtttgattgtgttagatacacatggg |
3528635 |
T |
|
| Q |
112 |
caacagaaatgttcacacgttactcaaattataaagttggagaaaatttagacaaactaaacctcactagttctaggttaggaatccgttttcataaccc |
211 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
3528634 |
caacaaaaatgttcacacgctactcaaattataaagttggagaaaatttagacaaactaaacctcactagttctaggttaggaattcgtttttataaccc |
3528535 |
T |
|
| Q |
212 |
ttctttcgagaacattaccgttgtggaagcatttgataacgtgattgatgagtttggaaaacaaggtatgatggttttggctgataatcatgttagtgat |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
3528534 |
ttctttcgagaacattaccgttgtggaagcatttgataacgtgattgatgagtttgggagacaaggtatgatggttttggctgataatcatgttagcgat |
3528435 |
T |
|
| Q |
312 |
cctaaatggtgttgtgacaataatgatgggaatggattctttggtgaccaatatttcaaccccgaagaatggctacaaggactttctaatgtttccaatc |
411 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
3528434 |
ccaaaatggtgttgtgacaataatgatgggaatggattctttggtgaccaatatttcaaccccgaagaatggctacaaggactttctaatgtttccaacc |
3528335 |
T |
|
| Q |
412 |
gtgtcaaaggaaaatctcaggtacatataaaacattatttctttctcttctataacaaatgtaaaatttaatttctaggttaactgttcattttatcaat |
511 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3528334 |
gtgtcaaaggaaaatctcaggtatatataaaacattatttctttctcttctataacaaatgtaaaatttaatttctaggttaactgttcattttatcaat |
3528235 |
T |
|
| Q |
512 |
catctagctagtatataatacactactactctatctatattactattaaaagggttacacaaatttttgatgtactctcttttggctaatggtctattat |
611 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3528234 |
cat----ctagtatataatacactactactctatctatattactattaaaagggttacacaaatttttgatgtactctcttttggctaatggtgtattat |
3528139 |
T |
|
| Q |
612 |
cttcaactaatatcttcgacatagataaaattttgaaaaaatggcataatagggttaagagagtacatcaaaaaagagagtacatcaaaaaattattcgt |
711 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
3528138 |
cttcaactaatatcttcgacacggataaaattttgaaaaaatggcataatagggttaagagagtacataaaaaaagagagtacataaaaaaattattcgt |
3528039 |
T |
|
| Q |
712 |
tgtggcaaatagggttaaga |
731 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
3528038 |
tgtggc-aatagggttaaga |
3528020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 494
Target Start/End: Complemental strand, 3535176 - 3534699
Alignment:
| Q |
18 |
gcaatggtagctgaaggtcttgaaacaatacctttaaaagatgttataacccaattgaagggattagggtttgattgtgttagatacacatgggcaacag |
117 |
Q |
| |
|
||||||||||||||||||||||| | || ||| ||||||||| | ||| | |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3535176 |
gcaatggtagctgaaggtcttgagataaaacccttaaaagatctcatagctcaattgaaggaattagggtttgattgtgttagatacacatgggcaacac |
3535077 |
T |
|
| Q |
118 |
aaatgttcacacgttactcaaattataaagttggagaaaatttagacaaactaaacctcactagttctaggttaggaatccgttttcataacccttcttt |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||| | | |||||||||||| |
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|
| T |
3535076 |
atatgttcacacgttactcaaattataaagttggagaaaatttagacaaattgaatctcaccagttctaggttaggaattgggaattttaacccttcttt |
3534977 |
T |
|
| Q |
218 |
cgagaacattaccgttgtggaagcatttgataacgtgattgatgagtttggaaaacaaggtatgatggttttggctgataatcatgttagtgatcctaaa |
317 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3534976 |
ggagaatattactgttgtggaagcatttgattttgtgattgatgagtttgggaaacaaggtatgatggttttggttgataatcatgttagtgatcctaaa |
3534877 |
T |
|
| Q |
318 |
tggtgttgtgacaataatgatgggaatggattctttggtgaccaatatttcaaccccgaagaatggctacaaggactttctaatgtttccaatcgtgtca |
417 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| |||||||| ||||||| | |||| | |||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
3534876 |
tggtgttgtcacaataaagatgggaatggattttttggtgatcaatattccgacccaaaggaatggttacaaggactttctaatgttgccaatcgtgtca |
3534777 |
T |
|
| Q |
418 |
aaggaaaatctcaggtacatataaaacattatttctttctcttctataacaaatgt-aaaatttaatttctaggttaa |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| |||| ||||| |||||||||| |
|
|
| T |
3534776 |
aaggaaaatctcaggtacatataaaacattatttatttttcttctataagaaatgtaaaaagttaatctctaggttaa |
3534699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 12 - 433
Target Start/End: Complemental strand, 3550892 - 3550471
Alignment:
| Q |
12 |
atgaatgcaatggtagctgaaggtcttgaaacaatacctttaaaagatgttataacccaattgaagggattagggtttgattgtgttagatacacatggg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3550892 |
atgaatgcaatggtagctgaaggtcttgacgcaatacctttaaaagatgttatagcccaattgaagggattagggtttgattgtgttagatacacatggg |
3550793 |
T |
|
| Q |
112 |
caacagaaatgttcacacgttactcaaattataaagttggagaaaatttagacaaactaaacctcactagttctaggttaggaatccgttttcataaccc |
211 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| | || ||||||||||||||||||||||| | | |||||| |
|
|
| T |
3550792 |
caacatatatgttcacacgttactcaaattataaagttggagaaaatttggacaaattgaatctcactagttctaggttaggaattggaaattttaaccc |
3550693 |
T |
|
| Q |
212 |
ttctttcgagaacattaccgttgtggaagcatttgataacgtgattgatgagtttggaaaacaaggtatgatggttttggctgataatcatgttagtgat |
311 |
Q |
| |
|
||||| |||| |||||| ||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3550692 |
atctttggagagcattactgttgtggaagcctttgattttgtggttgatgaatttggaaaacaaggtatgatggttttggctgataatcatgttagtgat |
3550593 |
T |
|
| Q |
312 |
cctaaatggtgttgtgacaataatgatgggaatggattctttggtgaccaatatttcaaccccgaagaatggctacaaggactttctaatgtttccaatc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||| ||||||||| ||||||||||||| ||||| |||| | |
|
|
| T |
3550592 |
cctaaatggtgttgtgacaataatgatggaaatggatgttttggtgaccaatattttaacctagaagaatggttacaaggactttccaatgtggccaacc |
3550493 |
T |
|
| Q |
412 |
gtgtcaaaggaaaatctcaggt |
433 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
3550492 |
gtgtcaaaggaaaacctcaggt |
3550471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 3556274 - 3555846
Alignment:
| Q |
12 |
atgaatgcaatggtagctgaaggtcttgaaacaatacctttaaaagatgttataacccaattgaagggattagggtttgattgtgttagatacacatggg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||| | ||||| ||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
3556274 |
atgaatgcaatggtagctgaaggtcttgacacaatacctttaaaagattgtatagctcaattaaagggattagggtttaattgtgtaagatatacatggg |
3556175 |
T |
|
| Q |
112 |
caacagaaatgttcacacgttactcaaattataaagttggagaaaatttagacaaactaaacctcactagttctaggttaggaatccgttttcataaccc |
211 |
Q |
| |
|
||||| | ||||| ||||||||||||| |||||||||||||||| || || ||| | || |||||| || ||||||||||||| | | |||||| |
|
|
| T |
3556174 |
caacacatatgtttacacgttactcaacaaataaagttggagaaaagttggataaattgaatctcactggtcctaggttaggaattgggaattttaaccc |
3556075 |
T |
|
| Q |
212 |
ttctttcgagaacattaccgttgtggaagcatttgataacgtgattgatgagtttggaaaacaaggtatgatggttttggctgataatcatgttagtgat |
311 |
Q |
| |
|
|||| | ||||| ||||| |||||||| || |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3556074 |
ttctatggagaatattactgttgtggaggcttttgattttgtgattgatgaatttggaaaacaaggtatgatggttttggctgataatcatgttagtgat |
3555975 |
T |
|
| Q |
312 |
cctaaatggtgttgtgacaataatgatgggaatggattctttggtgaccaatatttcaaccccgaagaatggctacaaggactttctaatgtttccaatc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||| |||||||||||||||||||| | |||| |
|
|
| T |
3555974 |
cctaaatggtgttgtgacaataatgatgggaatggattctttggtgatcaatattttaatccagaagaatggttacaaggactttctaatgttgctaatc |
3555875 |
T |
|
| Q |
412 |
gtgtcaaaggaaaatctcaggtacatata |
440 |
Q |
| |
|
|||||||||||||| ||||||| |||||| |
|
|
| T |
3555874 |
gtgtcaaaggaaaacctcaggttcatata |
3555846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 533 - 581
Target Start/End: Complemental strand, 3534586 - 3534538
Alignment:
| Q |
533 |
actactactctatctatattactattaaaagggttacacaaatttttga |
581 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3534586 |
actactactctatctatattactaataaaagggttacacaaatttttga |
3534538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 10764404 - 10764473
Alignment:
| Q |
284 |
ggttttggctgataatcatgttagtgatcctaaatggtgttgtgacaataatgatgggaatggattcttt |
353 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| ||||||||| | || |||||| |||||| |||||| |
|
|
| T |
10764404 |
ggttttgcttgataatcatgttagtgagcctaagtggtgttgtcatgatgatgatgagaatggtttcttt |
10764473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 38324925 - 38324958
Alignment:
| Q |
293 |
tgataatcatgttagtgatcctaaatggtgttgt |
326 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
38324925 |
tgataatcatgttagtgagcctaaatggtgttgt |
38324958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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