View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16699_low_6 (Length: 575)
Name: NF16699_low_6
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16699_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 38706445 - 38706006
Alignment:
| Q |
1 |
ttgttcctttcctatatatgttgtagatagaaaccaccaatatgttgacgctttttagcaagatcgcctgtttctgttctaccaacaa---tcagttcaa |
97 |
Q |
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| T |
38706445 |
ttgttcctttcctgtatatgttgtagatagaaaccaccaatatgttgacgctttttagcaagatcgcctgtttctgttctaccaacaacaatcagttcaa |
38706346 |
T |
|
| Q |
98 |
tgtttccacctggtaatgaccttttaaatgtgtatttgaccttttaaacaagaaaatggttgtgttgaaaagtgattatttgtctataaatattatattt |
197 |
Q |
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| T |
38706345 |
tgtttccacctggtaatgaccttttaaatttgtatttgaccttttgaacaagaaaatggttgtgttgaaaactgattatttgtctataaatattatattt |
38706246 |
T |
|
| Q |
198 |
cagcgaaaggttgctggaaaagttgattgtagatgaacgatcactgcttgaaacaaagaccaattgtgctgatgctatgtgcaaggaaatttataagcta |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
38706245 |
cagcgaaaggttgctggaaaagttgattgtagatgaacgatcactgcttgaaacaaagaccgattgtgatgatgctatgtgcaaggaaatttataagcta |
38706146 |
T |
|
| Q |
298 |
atcacaaatcaacaattaaacgatgcccatattctggtatacccattcactttccatccttttctatttaaaaattttaaacaattggtttaggatatac |
397 |
Q |
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| T |
38706145 |
atcacaaatcagcaattaaacgatgcccatattctggtatacccattcactttccatccttttctatttaaaatttttaaacaattggtttaggatatac |
38706046 |
T |
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| Q |
398 |
aaatacaatagaattttgttgttgtctatttttgcaggttgaa |
440 |
Q |
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| T |
38706045 |
aaatacaatagaattttg---ttgtctatttttgcaggttgaa |
38706006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 438 - 556
Target Start/End: Complemental strand, 38701964 - 38701846
Alignment:
| Q |
438 |
gaatgtcttatggatcagagaaacttgattgttgttctagagtatattgaatacttatgtgatcgagttgctaattacctttatctcattgaatcccaat |
537 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
38701964 |
gaatgtcttatggatcagagaaacttgattgctgttctagagtatattgaatacttttgtgatcgagttgctaatcacctttatctcattggatcccaat |
38701865 |
T |
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| Q |
538 |
ggtatattttaaacataaa |
556 |
Q |
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| T |
38701864 |
ggtatattttaaacataaa |
38701846 |
T |
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