View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16700_high_3 (Length: 313)

Name: NF16700_high_3
Description: NF16700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16700_high_3
NF16700_high_3
[»] chr3 (4 HSPs)
chr3 (24-302)||(47452128-47452406)
chr3 (24-291)||(11006188-11006461)
chr3 (24-276)||(11015766-11016024)
chr3 (31-291)||(11024763-11025029)
[»] chr4 (26 HSPs)
chr4 (24-159)||(7770983-7771118)
chr4 (25-180)||(48156770-48156925)
chr4 (24-162)||(7907904-7908042)
chr4 (24-165)||(7904611-7904752)
chr4 (24-168)||(7877299-7877443)
chr4 (24-159)||(7789668-7789803)
chr4 (40-131)||(7822564-7822655)
chr4 (26-128)||(7813061-7813163)
chr4 (26-131)||(7800218-7800323)
chr4 (55-152)||(7765231-7765328)
chr4 (61-153)||(45372427-45372519)
chr4 (24-195)||(33134148-33134325)
chr4 (32-195)||(48170911-48171080)
chr4 (56-165)||(48891020-48891129)
chr4 (26-126)||(45366618-45366718)
chr4 (24-172)||(49044580-49044728)
chr4 (31-161)||(48862827-48862960)
chr4 (55-152)||(7786053-7786150)
chr4 (24-152)||(7238091-7238219)
chr4 (24-168)||(7774184-7774328)
chr4 (59-183)||(48735649-48735779)
chr4 (61-131)||(50251200-50251270)
chr4 (61-126)||(49048996-49049061)
chr4 (59-162)||(49041499-49041602)
chr4 (31-130)||(50672106-50672205)
chr4 (24-130)||(48902529-48902635)
[»] chr8 (5 HSPs)
chr8 (60-183)||(15348477-15348603)
chr8 (52-131)||(12194908-12194987)
chr8 (52-143)||(12199914-12200005)
chr8 (52-131)||(12439336-12439415)
chr8 (52-143)||(12444342-12444433)
[»] chr5 (2 HSPs)
chr5 (70-193)||(29687676-29687802)
chr5 (67-126)||(29712866-29712925)
[»] chr6 (1 HSPs)
chr6 (22-188)||(21015353-21015519)
[»] chr1 (2 HSPs)
chr1 (67-161)||(24309799-24309893)
chr1 (61-143)||(24322078-24322160)
[»] scaffold0508 (1 HSPs)
scaffold0508 (73-161)||(11890-11978)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 24 - 302
Target Start/End: Complemental strand, 47452406 - 47452128
Alignment:
Q  24 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 123  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47452406 gtatctacctcttgaattgataatccagatcttggtgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 47452307  T
Q  124 tctgatcctctatttgcaaaaacacattttgaacttaccgccacacacactcgtagaattgtgtttataacatcaacccttgacgttcgatcaatagatt 223  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47452306 tctgatcctctctttgcaaaaacacattttgaacttaccgccgcacacactcgtagaattgtgtttataacatcaacccttgacgttcgatcaatagatt 47452207  T
Q  224 tagaagcgtcgcttaatgatgatagtgcctctacttcaccgaaccttaattttttgcttccccaatctgagtataatct 302  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47452206 tagaagcgtcacttaatgatgatagtgcttctacttcaccgaaccttaattttttgcttccccaatctgagtataatct 47452128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 24 - 291
Target Start/End: Complemental strand, 11006461 - 11006188
Alignment:
Q  24 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 123  Q
    |||||| |||| ||||||||| || || ||| |||||||||||||||||||||| ||| |||| ||||||||  ||| ||||||||||||  ||||||||    
T  11006461 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 11006362  T
Q  124 tctgatcctctatttgcaaaaacacattttgaacttaccgc---cacacacactcgtagaattgtgtttat---aacatcaacccttgacgttcgatcaa 217  Q
    ||||||||||  ||||||||| | |||||||| ||| || |    |||||||||  |||||||||||| ||   |||  || | |||||  ||||||| |    
T  11006361 tctgatcctcactttgcaaaatcgcattttgacctttccactagaacacacactaatagaattgtgttcatgtcaactccagctcttgaaattcgatcca 11006262  T
Q  218 tagatttagaagcgtcgcttaatgatgatagtgcctctacttcaccgaaccttaattttttgcttccccaatct 291  Q
    ||||||| ||||| |||||||| ||||||  ||| |||||||||| |||| |||||||| | |||||| |||||    
T  11006261 tagattttgaagcatcgcttaacgatgattctgcttctacttcactgaactttaattttatacttcccgaatct 11006188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 276
Target Start/End: Complemental strand, 11016024 - 11015766
Alignment:
Q  24 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 123  Q
    |||||| |||| |||||||||||| || ||| |||||||||| ||||||||||||||  |||| ||||| ||| ||| |||||||| |||  ||||||||    
T  11016024 gtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttatc 11015925  T
Q  124 tctgatcctctatttgcaaaaacacattttgaactt---accgccacacacactcgtagaattgtgtttat---aacatcaacccttgacgttcgatcaa 217  Q
    ||||||| |   ||||||||| | ||||||||||||   || || |||||||||  |||||||||||| ||   |||   | | |||||   |||||| |    
T  11015924 tctgatcataactttgcaaaatcgcattttgaactttccactgcaacacacactaatagaattgtgttcatgtcaactctagctcttgaaactcgatcca 11015825  T
Q  218 tagatttagaagcgtcgcttaatgatgatagtgcctctacttcaccgaaccttaatttt 276  Q
    | ||||| |||||||||||||| ||||||  ||| |||||||||| |||||||||||||    
T  11015824 ttgattttgaagcgtcgcttaacgatgattctgcttctacttcactgaaccttaatttt 11015766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 291
Target Start/End: Complemental strand, 11025029 - 11024763
Alignment:
Q  31 cctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatc 130  Q
    |||| ||||||||| || || ||| |||||||||| ||||||||||||||  |||| ||||| ||| ||| ||||||||||||  |||||||||||||||    
T  11025029 cctcatgaattgatcatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctgatc 11024930  T
Q  131 ctctatttgcaaaaacacattttgaacttacc---gccacacacactcgtagaattgtgtttat---aacatcaacccttgacgttcgatcaatagattt 224  Q
     |   ||||||||| | |||||||||||| ||   || |||||||||  |||||||||||| ||   |||   | | || ||   |||||| ||||||||    
T  11024929 ataactttgcaaaatcgcattttgaactttcccctgcaacacacactaatagaattgtgttcatgtcaactctagctctggaaactcgatccatagattt 11024830  T
Q  225 agaagcgtcgcttaatgatgatagtgcctctacttcaccgaaccttaattttttgcttccccaatct 291  Q
     ||||| |||||||| ||||||  ||| ||||||||||  |||||||||||| |||||||| |||||    
T  11024829 tgaagcatcgcttaacgatgattctgcttctacttcacttaaccttaattttatgcttcccgaatct 11024763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 7770983 - 7771118
Alignment:
Q  24 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 123  Q
    |||||| |||| |||| | |||||||| || ||| ||||||||||||||||||||||| || | ||||| ||| ||| |||||| |||||||||||||||    
T  7770983 gtatctgcctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatc 7771082  T
Q  124 tctgatcctctatttgcaaaaacacattttgaactt 159  Q
    ||||||||||  |||| |||  |||||||| |||||    
T  7771083 tctgatcctcactttgaaaattcacattttcaactt 7771118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 180
Target Start/End: Complemental strand, 48156925 - 48156770
Alignment:
Q  25 tatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatct 124  Q
    ||||| || |||||||||||||| || ||||| ||  |||| ||||||||||||||| |||| ||||||||| ||| |||||| ||||||||||||||||    
T  48156925 tatctgccacttgaattgataattcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatct 48156826  T
Q  125 ctgatcctctatttgcaaaaacacattttgaacttaccgccacacacactcgtaga 180  Q
    | ||| |||  ||||||||  | |||||| || ||||||| | |||| ||||||||    
T  48156825 ccgatactcattttgcaaattctcattttcaaattaccgcaaaacactctcgtaga 48156770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 7907904 - 7908042
Alignment:
Q  24 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 123  Q
    |||||| |||| |||||||||  ||||||||||  |||||||||||||||||||||||  ||| |||||||   ||  ||||||||||||||||||||||    
T  7907904 gtatcttcctcatgaattgattttccagatcctactgaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatc 7908003  T
Q  124 tctgatcctctatttgcaaaaacacattttgaacttacc 162  Q
    |||| ||| |  ||||||||  |||||||| ||||||||    
T  7908004 tctgctccccattttgcaaattcacattttcaacttacc 7908042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 7904611 - 7904752
Alignment:
Q  24 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 123  Q
    |||||| |||| ||||||||| || || ||| || || ||||||| |||||||||||| |||| ||||| ||  ||| ||||| ||||||||||||||||    
T  7904611 gtatcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatc 7904710  T
Q  124 tctgatcctctatttgcaaaaacacattttgaacttaccgcc 165  Q
    ||||||||||  ||||||||  |||||||| |||| ||||||    
T  7904711 tctgatcctcactttgcaaattcacattttcaactcaccgcc 7904752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 7877299 - 7877443
Alignment:
Q  24 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 123  Q
    |||||| |||| ||||||||| ||||| |||||| |  |||||| ||||||||||||| |||| ||||| ||||||| ||||  ||||||||||||||||    
T  7877299 gtatcttcctcatgaattgattatccaaatcctgatttggttgctggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatc 7877398  T
Q  124 tctgatcctctatttgcaaaaacacattttgaacttaccgccaca 168  Q
    ||||||||    ||||||||  |||||||| |||| ||| |||||    
T  7877399 tctgatcccaattttgcaaattcacattttcaactcaccaccaca 7877443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 7789668 - 7789803
Alignment:
Q  24 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 123  Q
    |||||| |||| |||| |||||||||| || ||| ||||||||||||||||||||||| || | ||||| ||| ||| |||||| ||||||||| |||||    
T  7789668 gtatctgcctcatgaactgataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatc 7789767  T
Q  124 tctgatcctctatttgcaaaaacacattttgaactt 159  Q
    || |||||||  |||| |||  |||||||| |||||    
T  7789768 tccgatcctcactttgaaaattcacattttcaactt 7789803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 7822564 - 7822655
Alignment:
Q  40 ttgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcc 131  Q
    ||||||||||  ||| ||||||||||||||||||||| |||| |||| ||||||||  ||| ||| ||||||||||||||||||||||||||    
T  7822564 ttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgatcc 7822655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 7813061 - 7813163
Alignment:
Q  26 atctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc 125  Q
    |||| |||| ||| ||||||||||  ||| ||||||||||||||||||||| |||| |||| ||||||||  ||| ||| ||||||||||||||||||||    
T  7813061 atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctc 7813160  T
Q  126 tga 128  Q
    |||    
T  7813161 tga 7813163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 7800218 - 7800323
Alignment:
Q  26 atctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc 125  Q
    |||| |||| ||| ||||||||||  ||| ||||||||||||||||||||| |||| |||| ||||||||  ||| ||| ||||||||||||||| ||||    
T  7800218 atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctc 7800317  T
Q  126 tgatcc 131  Q
    ||||||    
T  7800318 tgatcc 7800323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 7765231 - 7765328
Alignment:
Q  55 ctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattt 152  Q
    ||||||||||| ||||||||||||||  ||   ||||||||||||| ||||| |||||||||| |||||||||||||||  ||||||||  |||||||    
T  7765231 ctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcactttgcaaattcacattt 7765328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 45372519 - 45372427
Alignment:
Q  61 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacatttt 153  Q
    ||||||||||||||||||||| |||| ||||| ||  ||| |||||| ||||||||| |||||||||||||||  ||||||||  ||||||||    
T  45372519 aggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatcctcattttgcaaattcacatttt 45372427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 195
Target Start/End: Complemental strand, 33134325 - 33134148
Alignment:
Q  24 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 123  Q
    |||||| |||| ||||||||| ||||  || |||||||| || ||||||||||||||| | || ||||| ||| ||| |||| | || ||||||||||||    
T  33134325 gtatctgcctcatgaattgatcatccttattctgttgagattaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatc 33134226  T
Q  124 tc---tgatcctctatttgcaaaaacacattttgaacttaccgcc---acacacactcgtagaattgtgtttataaca 195  Q
    ||   ||||||||  ||||||||  |||||||| || | ||||||   ||||||||| ||| ||||||||| ||||||    
T  33134225 tctaatgatcctcactttgcaaattcacattttcaaataaccgcctcaacacacactagtaaaattgtgttcataaca 33134148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 48171080 - 48170911
Alignment:
Q  32 ctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc---tga 128  Q
    |||||||||||||| | || || ||| |||||||  |||||||||||||| |||| ||||| ||  ||| |||||| |||||| ||||||||||   |||    
T  48171080 ctcttgaattgatagttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctctcatga 48170981  T
Q  129 tcctctatttgcaaaaacacattttgaacttaccgcc---acacacactcgtagaattgtgtttataaca 195  Q
    |||||  ||||||||  | |||||| || ||||||||   ||||||||||||| |||| |||| ||||||    
T  48170980 tcctcactttgcaaattcgcattttcaaattaccgcctaaacacacactcgtaaaattatgttcataaca 48170911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 48891020 - 48891129
Alignment:
Q  56 tgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttga 155  Q
    ||||||||||  |||| ||||||||| |||| ||||| ||| ||| |||||| |||||||||||| |||| |||||||  ||||||||  | |||||| |    
T  48891020 tgttgaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttca 48891119  T
Q  156 acttaccgcc 165  Q
    ||||||||||    
T  48891120 acttaccgcc 48891129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 45366718 - 45366618
Alignment:
Q  26 atctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc 125  Q
    |||| |||| ||||||||| ||||| |||||  | ||||| || |||||||||||| |||| ||||||||| ||| |||||  |||||||||||||||||    
T  45366718 atcttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctc 45366619  T
Q  126 t 126  Q
    |    
T  45366618 t 45366618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 49044728 - 49044580
Alignment:
Q  24 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 123  Q
    |||||| |||| ||| ||||| ||||  || ||| |||||||||| |||| ||||||| |||| ||||||||  ||| ||||| ||||||||||||||||    
T  49044728 gtatctgcctcatgacttgatcatccttattctgctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatc 49044629  T
Q  124 tctgatcctctatttgcaaaaacacattttgaacttaccgccacacaca 172  Q
    ||| |  | |  ||||||||  ||||||||||| ||||||  |||||||    
T  49044628 tctcaaacccactttgcaaattcacattttgaaattaccgtgacacaca 49044580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 48862827 - 48862960
Alignment:
Q  31 cctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc---tg 127  Q
    |||| ||||||||| ||||  |||||| | ||||| ||||||||||||||| | || ||||| ||| |||  ||||| |||||||||||||||||   ||    
T  48862827 cctcatgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctctcatg 48862926  T
Q  128 atcctctatttgcaaaaacacattttgaacttac 161  Q
    ||||||  ||||||||  |||||||| |||||||    
T  48862927 atcctcactttgcaaattcacattttcaacttac 48862960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 7786053 - 7786150
Alignment:
Q  55 ctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattt 152  Q
    |||||||||||||||||||| |||||| ||   ||||| ||| ||| ||||  |||| ||||| ||||||||||||||| |||||||||  |||||||    
T  7786053 ctgttgaggttgccggtgaaatctcttatattgttcaaatgcgtttgtaagctatggatttctattatctctgatcctcaatttgcaaattcacattt 7786150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 7238219 - 7238091
Alignment:
Q  24 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 123  Q
    |||||| |||| |||| | || ||||| || ||| |||||||||| |||||||||||| |  | ||||| ||  ||| |||||| |||||||||||||||    
T  7238219 gtatctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatc 7238120  T
Q  124 tctgatcctctatttgcaaaaacacattt 152  Q
    ||||| ||||  ||||||||  |||||||    
T  7238119 tctgaccctcactttgcaaattcacattt 7238091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 168
Target Start/End: Complemental strand, 7774328 - 7774184
Alignment:
Q  24 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 123  Q
    |||||| |||| ||||||||| || || ||| || || || ||||||||||||||||| | |  ||||| ||  ||| ||||  ||||||||||||||||    
T  7774328 gtatcttcctcatgaattgattattcaaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatc 7774229  T
Q  124 tctgatcctctatttgcaaaaacacattttgaacttaccgccaca 168  Q
    |||||||| |  ||||||||  |||||||| |||| ||| |||||    
T  7774228 tctgatccccattttgcaaattcacattttcaactcaccaccaca 7774184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 183
Target Start/End: Complemental strand, 48735779 - 48735649
Alignment:
Q  59 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc---tgatcctctatttgcaaaaacacattttga 155  Q
    ||||||| ||||||||||||||| | || ||||| ||  ||| |||||| |||||||||||||||||   |||| ||   ||||||||  ||||||||||    
T  48735779 tgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctcctgtgatactgattttgcaaattcacattttga 48735680  T
Q  156 acttaccgcc---acacacactcgtagaatt 183  Q
    | ||||||||   || |||||||||||||||    
T  48735679 aattaccgccataacccacactcgtagaatt 48735649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 50251270 - 50251200
Alignment:
Q  61 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcc 131  Q
    |||||||| |||||| ||||| |||  || |||||  |||||||||| |||||||||||||||||||||||    
T  50251270 aggttgccagtgaaggctcttatacaattaaagtgggtttctaagtcttggttttctcttatctctgatcc 50251200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 49049061 - 49048996
Alignment:
Q  61 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct 126  Q
    ||||||| ||||| ||||||| |||| ||||||||  ||| ||||| |||||||||||||||||||    
T  49049061 aggttgctggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 49041602 - 49041499
Alignment:
Q  59 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaact 158  Q
    |||| ||||| |||||||||||| |  | ||||| ||| |||  ||||| ||||||||||||||||||||||| |  ||||||||  | |||||| ||||    
T  49041602 tgagattgccagtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctctgatccccattttgcaaattctcatttttaact 49041503  T
Q  159 tacc 162  Q
    ||||    
T  49041502 tacc 49041499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 50672106 - 50672205
Alignment:
Q  31 cctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatc 130  Q
    ||||| |||||||||||| ||||| || | |||||  | || |||| ||||| | | ||||||||  |||||||||||||| ||||||| ||||||||||    
T  50672106 cctctcgaattgataatcgagatcttgctaaggttatcagtcaagtgtcttgcatgtttcaagtgtgtttctaagtcatggctttctctcatctctgatc 50672205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 48902529 - 48902635
Alignment:
Q  24 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 123  Q
    ||||||||||| ||||||||| ||||| ||  ||  | |||||||||| ||||||||  | || ||||| ||  ||| |||||| ||||||||||||||     
T  48902529 gtatctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttata 48902628  T
Q  124 tctgatc 130  Q
    |||||||    
T  48902629 tctgatc 48902635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 15348477 - 15348603
Alignment:
Q  60 gaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaactt 159  Q
    |||||| ||||||||||||||| |||| ||||| ||| ||| |||||| ||||||||||||||||||||||||   || |||||  |||||||| || ||    
T  15348477 gaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 15348576  T
Q  160 accgcc---acacacactcgtagaatt 183  Q
    ||||||   ||||||||||||||||||    
T  15348577 accgccgcaacacacactcgtagaatt 15348603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 12194908 - 12194987
Alignment:
Q  52 atcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcc 131  Q
    |||||| ||||||||||||||||||||||| || | ||||| ||||||| |||||||||||| |||||||||||||||||    
T  12194908 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatcc 12194987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 12199914 - 12200005
Alignment:
Q  52 atcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaa 143  Q
    |||||| ||||||||||||||||||||||| || | ||||| ||  ||| ||||||||||||||||||||||||||||||||  ||||||||    
T  12199914 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaa 12200005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 12439336 - 12439415
Alignment:
Q  52 atcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcc 131  Q
    |||||| ||||||||||||||||||||||| || | ||||| ||||||| |||||||||||| |||||||||||||||||    
T  12439336 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatcc 12439415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 12444342 - 12444433
Alignment:
Q  52 atcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaa 143  Q
    |||||| ||||||||||||||||||||||| || | ||||| ||  ||| ||||||||||||||||||||||||||||||||  ||||||||    
T  12444342 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaa 12444433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 193
Target Start/End: Original strand, 29687676 - 29687802
Alignment:
Q  70 gtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaacttaccgcca--- 166  Q
    |||||||||||| |||||||||||||  ||| |||||| ||||||||||| || ||| | ||||  ||||||||  | |||||| ||||||||||||       
T  29687676 gtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttaccgccaatg 29687775  T
Q  167 cacacactcgtagaattgtgtttataa 193  Q
    ||||||||| ||||||| |||| ||||    
T  29687776 cacacactcctagaattctgttcataa 29687802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 29712925 - 29712866
Alignment:
Q  67 ccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct 126  Q
    ||||||||||||||| | || ||||||||| ||| ||||| |||||||||||||||||||    
T  29712925 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 29712866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 21015353 - 21015519
Alignment:
Q  22 cagtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctctta 121  Q
    |||||||| ||||  |||||||| ||||  ||  |||||||||| ||||| | ||||||| |||| ||||||||  ||| ||||| || |||||||||||    
T  21015353 cagtatctgcctcaagaattgatcatcctaattttgttgaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctctta 21015452  T
Q  122 tctctgatcctctatttgcaaaaacacattttgaacttaccgccacacacactcgtagaattgtgtt 188  Q
    ||||| |  | |  |||||||   ||||||||||| |||| ||| |||||| || ||||||| ||||    
T  21015453 tctctcaaacccactttgcaatttcacattttgaaattactgccgcacacaatcctagaattttgtt 21015519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 24309799 - 24309893
Alignment:
Q  67 ccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaacttac 161  Q
    ||||| ||||||||| | || ||||| | | ||| ||||| |||||||||||||||||||||| |||  ||||||||  |||||||| |||||||    
T  24309799 ccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctgattctcactttgcaaattcacattttcaacttac 24309893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 24322078 - 24322160
Alignment:
Q  61 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaa 143  Q
    ||||||| ||||||||||||| | || ||||| ||| ||| |||||| |||||||||||||||||  ||||||  ||||||||    
T  24322078 aggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctcaaatcctcgttttgcaaa 24322160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 11890 - 11978
Alignment:
Q  73 aagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaacttac 161  Q
    ||||||||| | || ||||| | | ||| ||||||||||||||||||||||||||||  ||  ||||||||  |||||||| |||||||    
T  11890 aagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctctgataatcactttgcaaattcacattttcaacttac 11978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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