View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16700_low_1 (Length: 416)
Name: NF16700_low_1
Description: NF16700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16700_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 25 - 401
Target Start/End: Complemental strand, 32055066 - 32054690
Alignment:
| Q |
25 |
gtcaccttcatcctctctagctaaaatacctagtcttgattttagcaaaggcttgcaagcttccaatcatcacaatcatattcatcatgacattggccaa |
124 |
Q |
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| T |
32055066 |
gtcaccttcatcctctctagctaaaatacctagtcttgattttagcaaaggcttgcaagcttccaatcaacacaaccatcatcatcatgacattggccaa |
32054967 |
T |
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| Q |
125 |
ggcaactcgccgtggggtcaatttggccaccgaatcgaggagaatcgtgagcatgtgcatgtacatgtacatgttcatgaccctcctcaatttagccatg |
224 |
Q |
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| T |
32054966 |
ggcaactcgccgtggggtcaatttggccaccgaatcgaggagaatcgtgagcatgtgcatgtacatgtacatgttcatgaccctcctcaatttagccatg |
32054867 |
T |
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| Q |
225 |
caaatgggagtacaaaaagtcctcggtcaaggaccggtggagatgatcgttcagcgtatagtttgagctatgatgatgtgagtacggcatctggaagann |
324 |
Q |
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| T |
32054866 |
caaatgggagtacaaaaagtcctcggtcaaggaccggtggagatgatcattcagcgtatagtttgagctatgatgatgtgagtacggcatctggaagagg |
32054767 |
T |
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| Q |
325 |
nnnnnnnnnnnnnnnnnnnnnaagacggagacctgggattcctcactctaagatttgtaccatttgtagtacctatg |
401 |
Q |
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| T |
32054766 |
tggtggtggtggtagtggtggacgacggagacctgggattcctcactctaagatttgtaccatttgtagtacctatg |
32054690 |
T |
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