View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16700_low_3 (Length: 315)
Name: NF16700_low_3
Description: NF16700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16700_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 23747603 - 23747305
Alignment:
| Q |
1 |
cgtctagaaaggaattaaaaagaaaagtgctgaaaatattcagttcatgagaggttatatttatacaattaaatgtaattttaatacatattcagcattt |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23747603 |
cgtctagaaaggagttaaaaagaaaagtgctgaaaatattcagttcatgagaggttatatttacacaattaaatgtaattttaatacatattcagcattt |
23747504 |
T |
|
| Q |
101 |
actacaattttcatcactaaaaattccaccatttcatttttagttgtaccaagcatgcctgaatcacaaggaaggtcttatcagttg-catcaatgctta |
199 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
23747503 |
actacaattttcatcactgaaaattccaccatttcatttttagttgtaccaagcatgcctgaatcacaaggaaggtcttatcagttgacattaatgctta |
23747404 |
T |
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| Q |
200 |
cctgaatatacccatgttgtactgtacaataaaaaacctaaataactatgtagaaaattatgcccgcaaagtatgttgtgtgcactagaattctgaatc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23747403 |
cctgaatatacccatgttgtactgtacaataaaaaacctaaataactatgtagaaaattatgcccgcgaagtatgttgtgtgcactagaattctgaatc |
23747305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 23693210 - 23693134
Alignment:
| Q |
107 |
attttcatcactaaaaattccaccatttcatttttagttgtaccaagcatgcctgaatcacaaggaaggtcttatca |
183 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
23693210 |
attttcatcactaaaatttccaccatttcattttcagttgtaccaagcttgcctaaatcacaaggaaggtcttatca |
23693134 |
T |
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