View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16700_low_6 (Length: 238)
Name: NF16700_low_6
Description: NF16700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16700_low_6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 42516677 - 42516456
Alignment:
| Q |
17 |
aaggagaaagagagtgataaagccaaggatggattttgacgccataggagagaattgagagtaagtaaggtttgtgtgatatttgtggagaaaaagaata |
116 |
Q |
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| T |
42516677 |
aaggagaaagagagtgataaagccaaggatggattttgacgccataggagagaattgagagtaagtaaggtttgtgtgatatttgtggagaaaaagaata |
42516578 |
T |
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| Q |
117 |
aagcgatgcacaaatatatcgattttttattgaagttttgaagaatgtgaaatattagggctggcacaacttattatatatatcctaacttttggttaaa |
216 |
Q |
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| T |
42516577 |
aagcgatgcacaaatatatcgaattttgattgaagttttgaagaatgtgatatatttgggctggcacaacttattatatatatcctaacttttggttaaa |
42516478 |
T |
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| Q |
217 |
gtatatcatcaatatacataat |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
42516477 |
gtatatcatcaatatacataat |
42516456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 42523329 - 42523106
Alignment:
| Q |
17 |
aaggagaaagagagtgataaagccaaggatggattttgacgccataggagagaattgagagtaagtaaggtttgtgtgatatttgtggagaaaaagaata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42523329 |
aaggagaaagagagtgataaagccaaggatggattttgacgccataggagagaattgagagtaagtaaggtttgtgcgatatttgtggagaaaaagaata |
42523230 |
T |
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| Q |
117 |
aagcgatgcacaaatatatcgattttttattgaagttttgaagaatgtgaaatattagggctggcacaacttattatat--atatcctaacttttggtta |
214 |
Q |
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| T |
42523229 |
aagcgatgcacaaatatatcgatttttgattgaagttttgaagaatgtgaaatattagggctggcacaacttattatatatatatcctaacttttggtta |
42523130 |
T |
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| Q |
215 |
aagtatatcatcaatatacataat |
238 |
Q |
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| T |
42523129 |
aagtatatcatcaatatacataat |
42523106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 42507156 - 42507037
Alignment:
| Q |
17 |
aaggagaaagagagtgataaagccaaggatggattttgacgccataggagag--aattgagagtaagtaaggtttgtgtgatatttgtggagaaaaagaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||||| |||||||||||||||||||||||| |
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| T |
42507156 |
aaggagaaagagagtgataaagccaaggatggattttgacgccatacgagagaaaattgaaagtaagt-aggtttttgtgatatttgtggagaaaaagaa |
42507058 |
T |
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| Q |
115 |
taaagcgatgcacaaatatat |
135 |
Q |
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||| ||||||||||||||||| |
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| T |
42507057 |
taatgcgatgcacaaatatat |
42507037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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