View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16701_high_1 (Length: 920)
Name: NF16701_high_1
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 377 - 722
Target Start/End: Original strand, 14944183 - 14944528
Alignment:
| Q |
377 |
cgggtatttataggaagggaaaaggagggacacgtgttggaagacgatttgatgaagatttagtgtgtgagatttttacatggcgacacgtgtgattttt |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14944183 |
cgggtatttataggaagggaaaaggagggacacgtgttggaagatgatttgatgaagatttagtgtgtgagatttttacatggcgacacgtgtgattttt |
14944282 |
T |
|
| Q |
477 |
ggatcatgtgaaaggagggtactgagaaagtgacgcgtggacgataaatatggaaagggaaggtgcttttgaaggtacgtagagtcagagaaagaaagtg |
576 |
Q |
| |
|
||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14944283 |
ggatcgtgtgaaaggtgggtgctgagaaagtgacgcgtggacgataaatatggaaagggaaggtgcttttgaaggtacgtagagtcagagaaagaaagtg |
14944382 |
T |
|
| Q |
577 |
tgtgtcgacatgcattgatgatgacaacgtggaattattaagattcaactttgagattggaggaaatgaataaaatttggctttgggttggctaaattat |
676 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14944383 |
tgtgtcgacatgcattgatgatgacaacgtggaattattaagattcaacgttgagattggaggaaatgaataaaatttggctttgggttggctaaattat |
14944482 |
T |
|
| Q |
677 |
ttgggttttcgatttattaaactaagtcaagttttttaggctaata |
722 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14944483 |
ttgggttttcgatttattaaactaagtcaagttttttaggcaaata |
14944528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 14943807 - 14944098
Alignment:
| Q |
17 |
agggtcaccggagccggaagatttgaatgattctctaagatctcatggaggaaaggttgaagaagaccaatcaaacgaatcgcttttctcgcatttcgtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
14943807 |
agggtcaccggagccggaagatttgaatgattctctaagatctcatggaggaaaggttgaagaagaccaatcaaacgaatggcttttctagcatttcgtt |
14943906 |
T |
|
| Q |
117 |
tgttggatgagaagaatttgtgttggaaattggaaatcttgtcggagagattgatgagggaagatagaagggtggaggaagcaatgtttatacatggatg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14943907 |
tgttggatgagaagaatttgtgttggaaattggaaatcttgtcggagagattgatgagggaagatagaagggtggaggaagcaatgtttatacatggatg |
14944006 |
T |
|
| Q |
217 |
aaccgccggaaagttcagtatccgacgacccgacccgttttctgttaggatcatgtagaaaatggaaaacgacaaaaagaaaatagttaaaa |
308 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14944007 |
aaccgccggaaagttcaatatccgacgacccgacccgttttctgttaggatcatgtagaaaatggaaaacgacaaaaagaaaatagttaaaa |
14944098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 709 - 904
Target Start/End: Original strand, 14944566 - 14944764
Alignment:
| Q |
709 |
tttttaggctaataaaaaattaatggcaagtcactatttgaccttgagctcatagagaaggactcccctcctaaaatatgaatttccaaaaata---cct |
805 |
Q |
| |
|
|||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14944566 |
tttttaagttaataaaaaattaatggcaagtgactatttgaccttgagctcatagagaaggactcccctcctaaaatatgaatttccaaaaataatacct |
14944665 |
T |
|
| Q |
806 |
ttcacatgccccctacgtaccaaactatcagaaatttcataaacgaaagatccattaaaactatcagaagtttcatacataaaaatatgattttaaaag |
904 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14944666 |
ttcacatgccccctacgtaccaaactatcagaaatttcataaacgaaagatccattaaaactatcagaagtttcatacataaaaatatgattttaaaag |
14944764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University