View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_high_11 (Length: 396)
Name: NF16701_high_11
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 5997231 - 5996920
Alignment:
| Q |
16 |
aaggggggctcgtgtcatatgcaaagatttcaagaagacacttaa----ccaata--ctattctcacgttggtgaaaatcaaaccacgtgtcctgatgat |
109 |
Q |
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| T |
5997231 |
aaggggggctcgtgtcatatacaaagatttcaagaagacacttaattaaccaatatactatactcacgttggtgaaaatcaaaccacgtgtcctgatgat |
5997132 |
T |
|
| Q |
110 |
gtacatgtaccactgaaagatccatggtatgataacgacaaatgaattactgtttatcatcctgagatgattgtgagcgtagtatcgatg-nnnnnnnnn |
208 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
5997131 |
gtacatgtaccacttaaagatccatggtatgataacgacaaatgaattactgtttatcatccttagatgattgtgagcgtagtatccatgtttttttttt |
5997032 |
T |
|
| Q |
209 |
ggttggttgaagataatacgctctatctttgagttcattcgaactgtaagtgccaaaattgtcgatagatatttgatgtcataccgtaaagttttaagtt |
308 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5997031 |
ggttggttgaagataatacgctcaatctttgagttcattcgaattgtaagtgccaaaattgtcggtagatatttgatgtcataccgtaaagttttaagtt |
5996932 |
T |
|
| Q |
309 |
tgatgtaatgtt |
320 |
Q |
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|||||||||||| |
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| T |
5996931 |
tgatgtaatgtt |
5996920 |
T |
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