View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_high_14 (Length: 371)
Name: NF16701_high_14
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 17227670 - 17227515
Alignment:
| Q |
19 |
gaagtagtagtagtagtaagataacatggggttgcgtggtgtgactgacacaaagaggtcccacatcgtaggccgataaacaagcacaattttcttaagc |
118 |
Q |
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| T |
17227670 |
gaagaagtagtagtagtaagataacatggggttgcgtggtgtgactgacacaaagaggtcccacatcgtaggccgataaacaagcacaattttcttaagc |
17227571 |
T |
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| Q |
119 |
cacttgaacactaaccccagttaggggacacattcagaaaggacagtatggcctaa |
174 |
Q |
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| T |
17227570 |
cacttgaacactaaccccagttaggggacacattcagaaaggacagtatggcctaa |
17227515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 221 - 357
Target Start/End: Complemental strand, 17227476 - 17227340
Alignment:
| Q |
221 |
attaataacacccatagcccacttctttctcccatgcacttgtcctcttcatttcaacttcaacccactcctcttcactct-ttctccaaatttaatttt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
17227476 |
attaataacacccatagcccacttctttctcccatgcacttgtcctcttca-ttcaacttcaacccactcctcttcactctcttcgccaaatttaatttt |
17227378 |
T |
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| Q |
320 |
attatcataccttagcaacattacaaaaaacatataac |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
17227377 |
attatcataccttagcaacattacaaaaaacatataac |
17227340 |
T |
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