View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16701_high_15 (Length: 368)

Name: NF16701_high_15
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16701_high_15
NF16701_high_15
[»] chr3 (9 HSPs)
chr3 (1-350)||(23147195-23147544)
chr3 (57-350)||(23040320-23040613)
chr3 (75-342)||(23037451-23037718)
chr3 (103-347)||(23018532-23018782)
chr3 (103-341)||(23025555-23025796)
chr3 (103-341)||(23141552-23141796)
chr3 (217-333)||(23150170-23150286)
chr3 (1-39)||(23040700-23040738)
chr3 (314-347)||(23034129-23034162)
[»] chr6 (1 HSPs)
chr6 (41-347)||(21781213-21781519)
[»] scaffold0554 (1 HSPs)
scaffold0554 (217-335)||(5110-5228)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 23147544 - 23147195
Alignment:
Q  1 aagataatgaccgatcataaaacaaactgaaaatgtacttaatagtgtagatgctgtatatataaagatactggctagtaggatatagttcaaactatcc 100  Q
    |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23147544 aagataataacagatcataaaacaaactgaaaatgtactcaatagtgtagatgctgtatatataaagatactggctagtaggatatagttcaaactatcc 23147445  T
Q  101 tatccatggctctactagtcctctacttgccatatattttcttctttatcctcttaacccttatagtacaaaagataagaaagaagaaaagttactcgac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23147444 tatccatggctctactagtcctctacttgccatatattttcttctttatcctcttaacccttatagtacaaaagataagaaagaagaaaagttactcggc 23147345  T
Q  201 ttataatataccgcctgggcctagaaagttaccaattataggaaatatacacaatctgttaagctctcaaccccatcgaaaattaagagacttggcnnnn 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        
T  23147344 ttataacataccgcctgggcctagaaagttaccaattataggaaatatacacaatctgttaagctctcaaccccatcaaaaattaagagacttggcgaaa 23147245  T
Q  301 nnntatggaccagtgatgcatcttcaacttggagaggtttctgctatggt 350  Q
       |||||||||||||||||||||||||||||||||||||||||||||||    
T  23147244 aaatatggaccagtgatgcatcttcaacttggagaggtttctgctatggt 23147195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 57 - 350
Target Start/End: Complemental strand, 23040613 - 23040320
Alignment:
Q  57 tatatataaagatactggctagtaggatatagttcaaactatcctatccatggctctactagtcctctacttgccatatattttcttctttatcctctta 156  Q
    |||||||| ||| ||| ||||||||||| |||||||||||||  || |||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  23040613 tatatatatagacactagctagtaggatttagttcaaactattttagccatggctctactaatcctctacttgccatatattttctcctttatcctctta 23040514  T
Q  157 acccttatagtacaaaagataagaaagaagaaaagttactcgacttataatataccgcctgggcctagaaagttaccaattataggaaatatacacaatc 256  Q
    |||||| |||||||||||||| |||| ||||||||||||||||||||||| ||||| || ||||||| ||||||||| ||||||||||||||||||||||    
T  23040513 acccttgtagtacaaaagataggaaacaagaaaagttactcgacttataacataccaccagggcctataaagttacctattataggaaatatacacaatc 23040414  T
Q  257 tgttaagctctcaaccccatcgaaaattaagagacttggcnnnnnnntatggaccagtgatgcatcttcaacttggagaggtttctgctatggt 350  Q
    |||||| ||||||||||||||||||| |||||||||||||       ||||||||  |||||||||||||||||||||||||||||||||||||    
T  23040413 tgttaacctctcaaccccatcgaaaactaagagacttggccaaaaaatatggacccctgatgcatcttcaacttggagaggtttctgctatggt 23040320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 75 - 342
Target Start/End: Complemental strand, 23037718 - 23037451
Alignment:
Q  75 ctagtaggatatagttcaaactatcctatccatggctctactagtcctctacttgccatatattttcttctttatcctcttaacccttatagtacaaaag 174  Q
    ||||||||||||  ||||  |||||||||||||||||||| |||| ||||||||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  23037718 ctagtaggatatgcttcattctatcctatccatggctctaatagttctctacttgccatattttttctcctttttcctcttaacccttatagtacaaaag 23037619  T
Q  175 ataagaaagaagaaaagttactcgacttataatataccgcctgggcctagaaagttaccaattataggaaatatacacaatctgttaagctctcaacccc 274  Q
    ||||||||||||||||||||||||| |||||| || || || ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23037618 ataagaaagaagaaaagttactcgatttataacatgccaccagggcctataaagttacctattataggaaatatacacaatctgttaagctctcaacccc 23037519  T
Q  275 atcgaaaattaagagacttggcnnnnnnntatggaccagtgatgcatcttcaacttggagaggtttct 342  Q
    || | |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  23037518 ataggaaattaagagacttggccaaaaaatatggaccagtgatgcatcttcaacttggagaggtttct 23037451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 103 - 347
Target Start/End: Complemental strand, 23018782 - 23018532
Alignment:
Q  103 tccatggctctactagtcctctacttgccatatattttcttctttatcctcttaacccttatagtacaaaagataagaaagaag------aaaagttact 196  Q
    |||||||||||||||| |||||||||| ||||| |||||| |||| |||||||| || || | ||||||||  || ||||||||      ||||   |||    
T  23018782 tccatggctctactagccctctacttgtcatatcttttctcctttgtcctcttagccattgttgtacaaaaagtaggaaagaagctcaaaaaaacagact 23018683  T
Q  197 cgacttataatataccgcctgggcctagaaagttaccaattataggaaatatacacaatctgttaagctctcaaccccatcgaaaattaagagacttggc 296  Q
    | |||| |||  | ||    |||||||||||| |||| |||||||||||||||||||||||  ||||||||||||||||| |||||||||| ||||||||    
T  23018682 caacttttaacctcccaaaagggcctagaaagctacctattataggaaatatacacaatcttctaagctctcaaccccatagaaaattaagtgacttggc 23018583  T
Q  297 nnnnnnntatggaccagtgatgcatcttcaacttggagaggtttctgctat 347  Q
           ||||||||  |||||||||||||||||||||| |||||| ||||    
T  23018582 caaaaaatatggacccttgatgcatcttcaacttggagaagtttctactat 23018532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 103 - 341
Target Start/End: Complemental strand, 23025796 - 23025555
Alignment:
Q  103 tccatggctctactagtcctctacttgccatatattttcttctttatcctcttaacccttatagtacaaaagataagaaagaagaaaagttactc-gac- 200  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| || || | ||||||||  || ||||||||   |   || | |||     
T  23025796 tccatggctttactagtcctctacttgtcatatattttcttctttattctcttagccattgttgtacaaaaagtaggaaagaagctcaagaacacagacc 23025697  T
Q  201 -ttataatataccgcctgggcctagaaagttaccaattataggaaatatacacaatctgttaagctctcaaccccatcgaaaattaagagacttggcnnn 299  Q
     || |||  | ||   ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||       
T  23025696 cttttaacctccctaatggacctagaaagctaccaattataggaaatatacacaatctgttaagctctcaaccacatcgaaaactacgagacttggcaag 23025597  T
Q  300 nnnntatggaccagtgatgcatcttcaacttggagaggtttc 341  Q
        ||||||||  |||||||||| |||||||||||| ||||    
T  23025596 agaatatggacccttgatgcatctccaacttggagagatttc 23025555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 341
Target Start/End: Complemental strand, 23141796 - 23141552
Alignment:
Q  103 tccatggctctactagtcctctacttgccatatattttcttctttatcctcttaacccttatagtacaaaagataagaaagaag------aaaagttact 196  Q
    |||||||||||||||||| |||||||| |||||||||||| |||| |||||||| |||||||  |||||||  ||  |||||||      || |   |||    
T  23141796 tccatggctctactagtcatctacttgtcatatattttctcctttgtcctcttagcccttattctacaaaaagtagaaaagaagttcaagaacacagact 23141697  T
Q  197 cgacttataatataccgcctgggcctagaaagttaccaattataggaaatatacacaatctgttaagctctcaaccccatcgaaaattaagagacttggc 296  Q
    | |||| |||  | ||    ||||||| |||| |||| |||||||||||| |||||||||||||||| |||||||| |||  |||| ||||||| |||||    
T  23141696 caacttttaacctccctaaagggcctataaagctacctattataggaaatttacacaatctgttaagttctcaaccacataaaaaactaagagatttggc 23141597  T
Q  297 nnnnnnntatggaccagtgatgcatcttcaacttggagaggtttc 341  Q
           ||||||||  ||||||||||||||||||||||| ||||    
T  23141596 tagaaaatatggacccttgatgcatcttcaacttggagagatttc 23141552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 23150286 - 23150170
Alignment:
Q  217 gggcctagaaagttaccaattataggaaatatacacaatctgttaagctctcaaccccatcgaaaattaagagacttggcnnnnnnntatggaccagtga 316  Q
    ||||||| |||| |||||||||| |||||| |||||||||||||||| |||||||| |||| |||| ||||||| |||||       ||||||||  |||    
T  23150286 gggcctataaagctaccaattattggaaatttacacaatctgttaagttctcaaccacatcaaaaactaagagatttggctagaaaatatggacccttga 23150187  T
Q  317 tgcatcttcaacttgga 333  Q
    |||||||||||||||||    
T  23150186 tgcatcttcaacttgga 23150170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23040738 - 23040700
Alignment:
Q  1 aagataatgaccgatcataaaacaaactgaaaatgtact 39  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  23040738 aagatactgacagatcataaaacaaactgaaaatgtact 23040700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 23034162 - 23034129
Alignment:
Q  314 tgatgcatcttcaacttggagaggtttctgctat 347  Q
    ||||||||||||||||||||||||||||| ||||    
T  23034162 tgatgcatcttcaacttggagaggtttctactat 23034129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 41 - 347
Target Start/End: Complemental strand, 21781519 - 21781213
Alignment:
Q  41 aatagtgtagatgctgtatatataaagatactggctagtaggatatagttcaaactatcctatccatggctctactagtcctctacttgccatatatttt 140  Q
    |||| |||| || ||||||||||| | | ||| |||| |||||||| | ||| |||||  | ||||||||||| ||||| ||||||||||||||||||||    
T  21781519 aataatgtatatactgtatatatataaacactagctattaggatatggatcatactatgttttccatggctcttctagttctctacttgccatatatttt 21781420  T
Q  141 cttctttatcctcttaacccttatagtacaaaagataagaaagaagaaaagttactcgacttataatataccgcctgggcctagaaagttaccaattata 240  Q
    || || | | ||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  21781419 ctcctctcttctcttaatccttatagtacaaaagatacgaaagaaaaaaagttactcgacttataacataccgccagggcctagaaagttacctattata 21781320  T
Q  241 ggaaatatacacaatctgttaagctctcaaccccatcgaaaattaagagacttggcnnnnnnntatggaccagtgatgcatcttcaacttggagaggttt 340  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  21781319 ggaaatatacacaatctgttaagctctcaacccaatcgaagattaagagacttggccaaaaaatatggaccagtgatgcatcttcaacttggagaggttt 21781220  T
Q  341 ctgctat 347  Q
    || ||||    
T  21781219 ctactat 21781213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 335
Target Start/End: Original strand, 5110 - 5228
Alignment:
Q  217 gggcctagaaagttaccaattataggaaatatacacaatctgttaagctctcaaccccatcgaaaattaagagacttggcnnnnnnntatggaccagtga 316  Q
    |||||||||||| |||| |||||||||||||| |||||| || ||||||||||||||||| | |||||||| ||||||||       |||||||| ||||    
T  5110 gggcctagaaagctacctattataggaaatattcacaatttgctaagctctcaaccccataggaaattaagtgacttggccaaaaaatatggacccgtga 5209  T
Q  317 tgcatcttcaacttggaga 335  Q
    |||||||||||||||||||    
T  5210 tgcatcttcaacttggaga 5228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University