View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_high_18 (Length: 319)
Name: NF16701_high_18
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 40570974 - 40571276
Alignment:
| Q |
1 |
tctcacttgacggtgaactgcgtgctgcatggccagtagcaagtgattgctattcagaaaatggtacaaaattgagccaaataattcaggatatcaacat |
100 |
Q |
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| T |
40570974 |
tctcactcgacggtgaactgcgtgctgcatggccagtagcaagtgattgctattcagaaaatggtacaaaattgagccaaataattcaggatatcaacat |
40571073 |
T |
|
| Q |
101 |
gacacattttcacatctcgccaactaaaaacaagttgatagcagttggttgtgacacggtgggagtattagaagcagctgattctgggcgaaaaacctac |
200 |
Q |
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| T |
40571074 |
gacacattttcacatctcgccaactaaaaacaagttgatagcagttggttgtgacacggtgggagtattagaagcagctgattctgggcgaaaaacctac |
40571173 |
T |
|
| Q |
201 |
gccacaggatgtgttgcttactgcaacaatcgtactgatattgtcgccaatcaaccttgctctggtattggttgctgtgagattcaattaccccaagttc |
300 |
Q |
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| T |
40571174 |
gccacaggatgtgttgcttactgcaacaatcgtactgatattgtcgccaatcaaccttgctctggtattggttgctgtgagattcaattaccccaagttc |
40571273 |
T |
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| Q |
301 |
aca |
303 |
Q |
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||| |
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| T |
40571274 |
aca |
40571276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 40577397 - 40577681
Alignment:
| Q |
1 |
tctcacttgacggtgaactgcgtgctgcatggccagtagcaagtgattgctattcagaaaatggtacaaaattgagccaaataattcaggatatcaacat |
100 |
Q |
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| T |
40577397 |
tctcacttaatggtgaacttcacgttgcatggccagtagccagctattgctattcaaaaaatggcacacaagtaaaccaaacatttcaggaaatcaacgt |
40577496 |
T |
|
| Q |
101 |
gacacattttcacatctcgccaactaaaaacaagttgatagcagttggttgtgacacggtggga------gtattagaagcagctgattctgggcgaaaa |
194 |
Q |
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| T |
40577497 |
gacacattttcacatct---caactcaaaacaagtttatagcagttggttgtgacacggtgggaatactcgcagtcggagaagctgattctgaggaaaaa |
40577593 |
T |
|
| Q |
195 |
acctacgccacaggatgtgttgcttactgcaacaatcgtactgatattgtcgccaatcaaccttgctctggtattggttgctgtgaga |
282 |
Q |
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| T |
40577594 |
acctacgccacaggatgtgtggctttctgcaacaggcttgatgatatcgaagccaatcaaccttgctctggtattggttgctgtgaga |
40577681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 89 - 297
Target Start/End: Original strand, 40566375 - 40566583
Alignment:
| Q |
89 |
ggatatcaacatgacacattttcacatctcgccaactaaaaacaagttgatagcagttggttgtgacacggtgggagtattagaagcagctgattctggg |
188 |
Q |
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|||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||||| ||||||||| | |||| | | || |||||||||| |
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| T |
40566375 |
ggatatgaacatgacacatttttacatctcgccaactcgaaacaagttgacagcagttggctgtgacacgattggagcactctcggcgattgattctggg |
40566474 |
T |
|
| Q |
189 |
cgaaaaacctacgccacaggatgtgttgcttactgcaacaatcgtactgatattgtcgccaatcaaccttgctctggtattggttgctgtgagattcaat |
288 |
Q |
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| T |
40566475 |
ggaaacaactacaccacaggatgtgtggctttatgcaacaggcttgatgatattatggccagtcaatcttgctcaggtactggttgttgcgagatttcaa |
40566574 |
T |
|
| Q |
289 |
taccccaag |
297 |
Q |
| |
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||||||||| |
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| T |
40566575 |
taccccaag |
40566583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 40595756 - 40595823
Alignment:
| Q |
90 |
gatatcaacatgacacattttcacatctcgccaactaaaaacaagttgatagcagttggttgtgacac |
157 |
Q |
| |
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| T |
40595756 |
gatatcaagatgccacattttcacgtctcgccaactcaaaacaagttgatagcagttggatgtgacac |
40595823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 40589340 - 40589416
Alignment:
| Q |
78 |
caaataattcaggatatcaacatgacacattttcacatctcgccaactaaaaacaagttgatagcagttggttgtga |
154 |
Q |
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|||| ||||||| |||||||||||||||||||||| |||| || ||| |||||||||| |||||||||| ||||| |
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| T |
40589340 |
caaacaattcagtttatcaacatgacacattttcacctctctcccactcgaaacaagttggtagcagttggctgtga |
40589416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 8490733 - 8490797
Alignment:
| Q |
93 |
atcaacatgacacattttcacatctcgccaactaaaaacaagttgatagcagttggttgtgacac |
157 |
Q |
| |
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| T |
8490733 |
atcaacatgacacatcttcaaatctcaccaaccggaaacaagttgatagcagttggttgtgacac |
8490797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2017387 - 2017336
Alignment:
| Q |
1 |
tctcacttgacggtgaactgcgtgctgcatggccagtagcaagtgattgcta |
52 |
Q |
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|||| ||||| ||||||||||||| ||||||||||||||| || |||||||| |
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| T |
2017387 |
tctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgcta |
2017336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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