View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_high_2 (Length: 650)
Name: NF16701_high_2
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 21 - 623
Target Start/End: Complemental strand, 43536402 - 43535801
Alignment:
| Q |
21 |
atggttcccaaaaagaaacacaaaaattggaacacttaattagcataatttctaatattttgggtgtccgttaataacacgtatggaaaatgtgaagcta |
120 |
Q |
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| T |
43536402 |
atggttcccaaaaagaaacacaaaaattggaacacttaattagcataatttctaatattttgggtgtccgttaataacacgtatggaaaatgtgaagcta |
43536303 |
T |
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| Q |
121 |
attaattagtgaatttgctcttgcttattgattgataggaaaccaccataatttcgttgatatttggtattcccacaaattttgatcacttggatcaact |
220 |
Q |
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| T |
43536302 |
attaattagtgaatttgctcttatttattgattgataggaaaccaccataatttcgttgatatttgcttttcccacaaattttgatcacttggatcaact |
43536203 |
T |
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| Q |
221 |
atgagattaatctccactctagtttaaagttctttgccccttcctaaaatagtgtttttggaaatcaaacctttgttcaaggttctcttccacaaaacca |
320 |
Q |
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| T |
43536202 |
atgagattaatctccactctagtttaaagttctttgccccttcctaaaatagtgtttttggaaatcaaacctttgttcaaggttctcttccacaaaacca |
43536103 |
T |
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| Q |
321 |
gctggccaactaactcttccacatttatttgcatgacatggtaaattgattgattttattagataacagtctaaaactactttacacggttggtgagtgc |
420 |
Q |
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| T |
43536102 |
gctggccaactaactcttccacatttatttgcatgacatggtaaattgattgattttattagataacagtctaaaactactttacacggtt-gtgagtgc |
43536004 |
T |
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| Q |
421 |
tcaataaactcaatattaacatgcaattgtttcaaaatattgtatgcaacccctttttagagtaaaaatatgtaactttttatctgatcatgatgcaaaa |
520 |
Q |
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| T |
43536003 |
tcaataaactcaatattaacatgcaattgtttcaaaatattgtatgcaacccctttttagagtaaaaatatgtaactttttatctgatcatgatgcaaaa |
43535904 |
T |
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| Q |
521 |
gtgttagaaaatggaatagaaatatttattgatatttaaacattaatttcttagtccaaaccttatctcactaggtttgattttttcttcttcttctaaa |
620 |
Q |
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| T |
43535903 |
gtgttagaaaatggaatataaatatttattgatatttaaacattaatttcttagtccaaaccttatctcactaggtttgattttttcttcttcttctaaa |
43535804 |
T |
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| Q |
621 |
gag |
623 |
Q |
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| T |
43535803 |
gag |
43535801 |
T |
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