View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16701_high_21 (Length: 308)
Name: NF16701_high_21
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 444852 - 444578
Alignment:
| Q |
16 |
atcataatatttaggctgaaaacgacctaaggaatttttataaaacatttatcgaacnnnnnnngaaaggatacctcaatgctggatgaaaagaagctgt |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
444852 |
atcataatatttaggctgaacacgacctaaggaatttttataaaacatttatcgaacaaaaaaagaaaggatacctcaatgctggatgaaaagaagctgt |
444753 |
T |
|
| Q |
116 |
gcaagtagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaactgcttcattctcttcc |
215 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
444752 |
gcaaatagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaactgcttcattctcttcc |
444653 |
T |
|
| Q |
216 |
tattgaaacatacattcattgaattaaaaactcgggaaaactaatattataatttccttgaatctaaaggccaaat |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
444652 |
tattgaaacatacattcattgaattaaaaactcgggaaaactaatattataatttccttg-atctaaaggccaaat |
444578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 465373 - 465510
Alignment:
| Q |
105 |
aaagaagctgtgcaagtagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaactgctt |
204 |
Q |
| |
|
||||| || |||||| | ||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |||||||||| | |
|
|
| T |
465373 |
aaagaggcggtgcaaattgcatttgctgttttttcatcaaaccacacttccctcttgtaaagcttccacagaatcacaagcactctcatggcaactgcat |
465472 |
T |
|
| Q |
205 |
cattctcttcctattgaaacatacattcattgaattaa |
242 |
Q |
| |
|
| ||| ||||||||| ||| | |||| |||||||||| |
|
|
| T |
465473 |
ctttcgcttcctattcaaaaacacatgaattgaattaa |
465510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 443539 - 443455
Alignment:
| Q |
114 |
gtgcaagtagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaa |
198 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
443539 |
gtgcaaattgcatttgctgttttttcatcaaaccacactttcctctggtaaagctcccacagagtcacaagcactctcttggcaa |
443455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University