View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_high_25 (Length: 286)
Name: NF16701_high_25
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_high_25 |
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| [»] scaffold0126 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 25 - 280
Target Start/End: Original strand, 17595803 - 17596060
Alignment:
| Q |
25 |
ttacaatgcattcattagcaaaacaaaaaatcaataacaagggattttattttaaagaaaattatttttgtcgtcacttaatttaatttataccctagaa |
124 |
Q |
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| T |
17595803 |
ttacaatgcattcattagcaaaacaaaaaatcaataacaagggattttattttaaacaaaattattttcgtcgtcccttaacttgatttatgccctagaa |
17595902 |
T |
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| Q |
125 |
atctacgtactttc-nnnnnnnaaatagattcaaagagcatcaattcaatataaacc-nnnnnnngtagaaaatagaaaataggaactataccaaaactt |
222 |
Q |
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| T |
17595903 |
atctacgtactttcttttttttaaatagattcaaagagcatcaattcaatataaaccaaaaaagagtagaaaatagaaaatagaaactataccaaaacct |
17596002 |
T |
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| Q |
223 |
ttttaaaaggtgttaaatcttaaattaggcattcccaacttatttccagtataatcta |
280 |
Q |
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| T |
17596003 |
ttttaaaaggtgttaaatctgaaattaggcattcccaacttatttccagtgtaatcta |
17596060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 34427032 - 34427090
Alignment:
| Q |
208 |
actataccaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaacttatt |
266 |
Q |
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| T |
34427032 |
actaaaccaaaacttttttaaaaggtgttaaatttgaaattgggtattcccaacctatt |
34427090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 10194016 - 10194056
Alignment:
| Q |
208 |
actataccaaaacttttttaaaaggtgttaaatcttaaatt |
248 |
Q |
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| T |
10194016 |
actataccaaaaccttttcaaaaggtgttaaatctgaaatt |
10194056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 41517773 - 41517826
Alignment:
| Q |
208 |
actataccaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaac |
261 |
Q |
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| T |
41517773 |
actataccaaaaccttttcaaaagttgcaaaatctgaaattaggcattcccaac |
41517826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 19280593 - 19280646
Alignment:
| Q |
213 |
accaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaacttatt |
266 |
Q |
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| T |
19280593 |
accaaaacctttttaaaaggtgttaaacctgaaattgggcatacccaacatatt |
19280646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 45992488 - 45992435
Alignment:
| Q |
213 |
accaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaacttatt |
266 |
Q |
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| T |
45992488 |
accaaaaccttttcaataggtgttaaatctgaaattgggcatacccaacttatt |
45992435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 44127 - 44095
Alignment:
| Q |
146 |
aaatagattcaaagagcatcaattcaatataaa |
178 |
Q |
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| T |
44127 |
aaatagatgcaaagagcatcaattcaatataaa |
44095 |
T |
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