View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16701_high_26 (Length: 275)

Name: NF16701_high_26
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16701_high_26
NF16701_high_26
[»] chr2 (20 HSPs)
chr2 (1-266)||(27640592-27640857)
chr2 (1-75)||(11482814-11482888)
chr2 (117-171)||(8263285-8263339)
chr2 (118-159)||(11482958-11482999)
chr2 (1-77)||(8263400-8263476)
chr2 (1-73)||(42473746-42473818)
chr2 (118-162)||(43471499-43471543)
chr2 (119-162)||(1021114-1021157)
chr2 (119-162)||(1115084-1115127)
chr2 (116-162)||(18868483-18868529)
chr2 (118-159)||(11935421-11935462)
chr2 (118-162)||(13615895-13615939)
chr2 (118-162)||(16194434-16194478)
chr2 (118-162)||(22674785-22674829)
chr2 (119-171)||(26293220-26293272)
chr2 (118-162)||(26860594-26860638)
chr2 (118-162)||(31392728-31392772)
chr2 (118-162)||(34983458-34983502)
chr2 (118-162)||(38763896-38763940)
chr2 (130-162)||(44788476-44788508)
[»] chr3 (14 HSPs)
chr3 (5-75)||(25807140-25807210)
chr3 (5-68)||(44521268-44521331)
chr3 (8-77)||(25894550-25894619)
chr3 (131-162)||(25894699-25894730)
chr3 (131-162)||(25911666-25911697)
chr3 (119-162)||(52202051-52202094)
chr3 (5-75)||(18657999-18658069)
chr3 (128-162)||(25807025-25807059)
chr3 (118-171)||(34660806-34660859)
chr3 (118-162)||(11232087-11232131)
chr3 (118-162)||(22729402-22729446)
chr3 (118-162)||(32270852-32270896)
chr3 (118-162)||(44254533-44254577)
chr3 (118-162)||(50527566-50527610)
[»] chr1 (19 HSPs)
chr1 (1-77)||(18113669-18113745)
chr1 (5-76)||(27324729-27324800)
chr1 (117-171)||(43060306-43060360)
chr1 (117-162)||(27324616-27324661)
chr1 (116-159)||(42225374-42225417)
chr1 (131-162)||(45807081-45807112)
chr1 (119-162)||(51139755-51139798)
chr1 (15-77)||(43060177-43060239)
chr1 (133-162)||(1243675-1243704)
chr1 (117-158)||(15084011-15084052)
chr1 (118-162)||(919641-919685)
chr1 (118-162)||(8086412-8086456)
chr1 (118-158)||(9246945-9246985)
chr1 (118-162)||(25299019-25299063)
chr1 (118-162)||(32540638-32540682)
chr1 (118-162)||(40567148-40567192)
chr1 (237-265)||(44709492-44709520)
chr1 (118-162)||(45837026-45837070)
chr1 (118-162)||(48708348-48708392)
[»] chr4 (15 HSPs)
chr4 (117-162)||(49130281-49130326)
chr4 (7-77)||(15632313-15632383)
chr4 (8-74)||(49130392-49130458)
chr4 (5-75)||(5734218-5734288)
chr4 (116-162)||(15632201-15632247)
chr4 (118-159)||(27270425-27270466)
chr4 (118-171)||(36801906-36801959)
chr4 (118-162)||(13233412-13233456)
chr4 (22-74)||(15632201-15632253)
chr4 (118-162)||(18491369-18491413)
chr4 (118-162)||(41832559-41832603)
chr4 (118-162)||(44134675-44134719)
chr4 (118-162)||(44745522-44745566)
chr4 (118-162)||(50767103-50767147)
chr4 (118-162)||(54795774-54795818)
[»] scaffold0778 (2 HSPs)
scaffold0778 (5-77)||(1299-1371)
scaffold0778 (131-159)||(1451-1479)
[»] chr7 (11 HSPs)
chr7 (1-77)||(25090148-25090224)
chr7 (26-74)||(8727905-8727953)
chr7 (119-162)||(26873772-26873815)
chr7 (116-162)||(6429048-6429094)
chr7 (119-160)||(22566626-22566667)
chr7 (118-162)||(17167049-17167093)
chr7 (118-162)||(22723708-22723752)
chr7 (118-162)||(23469328-23469372)
chr7 (118-162)||(31065555-31065599)
chr7 (118-162)||(44142943-44142987)
chr7 (118-162)||(44723995-44724039)
[»] chr6 (8 HSPs)
chr6 (5-77)||(13405269-13405341)
chr6 (118-171)||(13405408-13405461)
chr6 (119-162)||(12698564-12698607)
chr6 (131-162)||(13405307-13405338)
chr6 (119-162)||(26468518-26468561)
chr6 (118-162)||(7022000-7022044)
chr6 (118-162)||(15469272-15469316)
chr6 (119-159)||(34127570-34127610)
[»] scaffold0028 (1 HSPs)
scaffold0028 (9-75)||(33689-33755)
[»] chr8 (19 HSPs)
chr8 (1-74)||(25269933-25270006)
chr8 (118-162)||(7413101-7413145)
chr8 (116-156)||(14164681-14164721)
chr8 (118-162)||(17032988-17033032)
chr8 (118-162)||(17563424-17563468)
chr8 (131-162)||(8996530-8996561)
chr8 (119-162)||(43117418-43117461)
chr8 (9-75)||(8996529-8996594)
chr8 (129-162)||(2317131-2317164)
chr8 (118-171)||(25642778-25642831)
chr8 (118-162)||(3886713-3886757)
chr8 (118-162)||(5590106-5590150)
chr8 (118-162)||(7012520-7012564)
chr8 (118-162)||(7422094-7422138)
chr8 (118-162)||(22658279-22658323)
chr8 (5-77)||(36257516-36257588)
chr8 (118-162)||(38567312-38567356)
chr8 (118-162)||(42556026-42556070)
chr8 (118-162)||(43117532-43117576)
[»] chr5 (6 HSPs)
chr5 (118-162)||(8074283-8074327)
chr5 (129-171)||(36244240-36244282)
chr5 (118-162)||(7440412-7440456)
chr5 (119-171)||(9737752-9737804)
chr5 (118-162)||(32304584-32304628)
chr5 (34-74)||(41817636-41817676)
[»] scaffold0050 (1 HSPs)
scaffold0050 (119-170)||(19107-19158)
[»] scaffold1390 (2 HSPs)
scaffold1390 (5-75)||(735-805)
scaffold1390 (131-159)||(625-653)
[»] scaffold0014 (1 HSPs)
scaffold0014 (118-162)||(65230-65274)
[»] scaffold0008 (1 HSPs)
scaffold0008 (5-77)||(35984-36056)


Alignment Details
Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 27640857 - 27640592
Alignment:
Q  1 tcacatgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctatgannnnnnnnnnnnnnnnnnnncag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||                    |||    
T  27640857 tcacatgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaactcgtaaaatagacctatgatttttaatttttgaatttttcag 27640758  T
Q  101 gtggaccactacaccaactaaaaccgcaacaaaattgtttaaaatctcgcaaaatagacctaggatcgttagnnnnnnnnnnnnncctgatgggccgtgg 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||             ||| ||||| |||||    
T  27640757 gtggatcactacaccaactaaaaccgcaacaaaattgtttaaaatctcgcaaaataaacctaggatcgttagttttttaatttttcctaatgggtcgtgg 27640658  T
Q  201 cccacccctgcccataaagagctctgcccctgttattgttagagtgttacttttcccaccctatgc 266  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27640657 cccaccccagcccataaagggctctgcccctgttattgttagagtgttacttttcccaccctatgc 27640592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 11482814 - 11482888
Alignment:
Q  1 tcacatgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctat 75  Q
    |||||||| ||||||||||||| | |||||  ||||||||||||||||||||||||| |||||||||| ||||||    
T  11482814 tcacatgttacttttagaaccgtcgaaaacctaaaccattgaaaaattgtttaaaaactcgtaaaataaacctat 11482888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 8263339 - 8263285
Alignment:
Q  117 actaaaaccgcaacaaaattgtttaaaatctcgcaaaatagacctaggatcgtta 171  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||| ||||||||    
T  8263339 actaaaaccacaacaaaattatttaaaatctcacaaaatagacctacgatcgtta 8263285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 11482958 - 11482999
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagac 159  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  11482958 ctaaaaccgcatcaaaattgtttaaaatctcgcaaaatagac 11482999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8263476 - 8263400
Alignment:
Q  1 tcacatgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctatga 77  Q
    |||||||||||||||| ||  ||| ||||| |||| | ||||||||||||||| ||| ||||||||||| |||||||    
T  8263476 tcacatgtcacttttaaaattgccgaaaacccaaatcgttgaaaaattgtttagaaactcgtaaaataggcctatga 8263400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 42473818 - 42473746
Alignment:
Q  1 tcacatgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacct 73  Q
    ||||||||||||||| |||||  |||||||||||||  ||||||||||||| ||||  ||| |||||||||||    
T  42473818 tcacatgtcacttttggaaccatcaaaaactcaaactgttgaaaaattgttcaaaacctcgcaaaatagacct 42473746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 43471499 - 43471543
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  |||||||||| |||||||||||||||||||||||    
T  43471499 ctaaaaccgacacaaaattgtataaaatctcgcaaaatagaccta 43471543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 1021114 - 1021157
Alignment:
Q  119 taaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||  |||||||||| |||||||||||||||||||||||    
T  1021114 taaaaccgacacaaaattgtataaaatctcgcaaaatagaccta 1021157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 1115084 - 1115127
Alignment:
Q  119 taaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||  |||||||||| |||||||||||||||||||||||    
T  1115084 taaaaccgacacaaaattgtataaaatctcgcaaaatagaccta 1115127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 18868529 - 18868483
Alignment:
Q  116 aactaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||||| ||||| ||||||||||| || |||||||||||||    
T  18868529 aactaaaaccgccacaaagttgtttaaaatatcacaaaatagaccta 18868483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 11935421 - 11935462
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagac 159  Q
    |||||||||  |||||||||| ||||||||||||||||||||    
T  11935421 ctaaaaccgacacaaaattgtataaaatctcgcaaaatagac 11935462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 13615895 - 13615939
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  13615895 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 13615939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 16194478 - 16194434
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  16194478 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 16194434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 22674785 - 22674829
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  |||||||||  |||||||||||||||||||||||    
T  22674785 ctaaaaccgacacaaaattgcataaaatctcgcaaaatagaccta 22674829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 26293272 - 26293220
Alignment:
Q  119 taaaaccgcaacaaaattgtttaaaatctcgcaaaatagacctaggatcgtta 171  Q
    ||||||||  |||||||||  |||||||||||||||||||||||  |||||||    
T  26293272 taaaaccgacacaaaattgcataaaatctcgcaaaatagacctataatcgtta 26293220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 26860594 - 26860638
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  26860594 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 26860638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 31392772 - 31392728
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  31392772 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 31392728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 34983502 - 34983458
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  34983502 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 34983458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 38763940 - 38763896
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  38763940 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 38763896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 44788476 - 44788508
Alignment:
Q  130 caaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||||||||||||| ||||||||||||    
T  44788476 caaaattgtttaaaatctcgaaaaatagaccta 44788508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 25807210 - 25807140
Alignment:
Q  5 atgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctat 75  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  25807210 atgtcacttttagaaccgccgaaaacccaaaccattgaaaaattgtttaaaaactcgtaaaatagacctat 25807140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 44521268 - 44521331
Alignment:
Q  5 atgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaata 68  Q
    |||||||||||||||||||| |||||  |||||||| |||||||||||||||| ||||||||||    
T  44521268 atgtcacttttagaaccgccgaaaacctaaaccattaaaaaattgtttaaaaactcgtaaaata 44521331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 25894550 - 25894619
Alignment:
Q  8 tcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctatga 77  Q
    |||||||||||||| || ||||| |||||| |||||||||| |||||||  |||||||||||||||||||    
T  25894550 tcacttttagaaccaccgaaaacccaaaccgttgaaaaattatttaaaacctcgtaaaatagacctatga 25894619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 162
Target Start/End: Original strand, 25894699 - 25894730
Alignment:
Q  131 aaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||||||||||||||||||||||||||    
T  25894699 aaaattgtttaaaatctcgcaaaatagaccta 25894730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 162
Target Start/End: Original strand, 25911666 - 25911697
Alignment:
Q  131 aaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||||||||||||||||||||||||||    
T  25911666 aaaattgtttaaaatctcgcaaaatagaccta 25911697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 52202094 - 52202051
Alignment:
Q  119 taaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||  |||||||||| |||||||||||||||||||||||    
T  52202094 taaaaccgacacaaaattgtataaaatctcgcaaaatagaccta 52202051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 18658069 - 18657999
Alignment:
Q  5 atgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctat 75  Q
    |||||||||||  ||||||  ||||||  |||| ||||||| ||||||||| | |||||||||||||||||    
T  18658069 atgtcacttttgaaaccgcggaaaactataaccgttgaaaatttgtttaaagactcgtaaaatagacctat 18657999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 162
Target Start/End: Complemental strand, 25807059 - 25807025
Alignment:
Q  128 aacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||||||||||||||||| |||||||||||    
T  25807059 aacaaaattgtttaaaatctcgctaaatagaccta 25807025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 34660859 - 34660806
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagacctaggatcgtta 171  Q
    |||||||||  |||||||| | |||||||||| |||||||||||| ||||||||    
T  34660859 ctaaaaccgacacaaaattatataaaatctcgtaaaatagacctatgatcgtta 34660806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 11232087 - 11232131
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  11232087 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 11232131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 22729446 - 22729402
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  22729446 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 22729402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 32270852 - 32270896
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  32270852 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 32270896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 44254533 - 44254577
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  44254533 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 44254577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 50527566 - 50527610
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  50527566 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 50527610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18113745 - 18113669
Alignment:
Q  1 tcacatgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctatga 77  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  18113745 tcacatgtcgcttttggaaccgccgaaaactcaaaccattgaaaaattgtttaaaacctcgcaaaatagacctatga 18113669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 27324800 - 27324729
Alignment:
Q  5 atgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctatg 76  Q
    |||||| ||||||||||||| ||||  |||||| ||||||||||||||||||| |||||||| |||||||||    
T  27324800 atgtcatttttagaaccgccgaaaatccaaaccgttgaaaaattgtttaaaaactcgtaaaacagacctatg 27324729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 43060306 - 43060360
Alignment:
Q  117 actaaaaccgcaacaaaattgtttaaaatctcgcaaaatagacctaggatcgtta 171  Q
    |||||||||| | ||||||||||||||||||||||||||||||||| ||||||||    
T  43060306 actaaaaccgtagcaaaattgtttaaaatctcgcaaaatagacctacgatcgtta 43060360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 27324661 - 27324616
Alignment:
Q  117 actaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  27324661 actaaaaccgcaacaaaattgtttaaaatctcgtaaaatagaccta 27324616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 42225417 - 42225374
Alignment:
Q  116 aactaaaaccgcaacaaaattgtttaaaatctcgcaaaatagac 159  Q
    ||||||||| ||  ||||||||||||||||||||||||||||||    
T  42225417 aactaaaactgcctcaaaattgtttaaaatctcgcaaaatagac 42225374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 162
Target Start/End: Complemental strand, 45807112 - 45807081
Alignment:
Q  131 aaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||||||||||||||||||||||||||    
T  45807112 aaaattgtttaaaatctcgcaaaatagaccta 45807081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 51139798 - 51139755
Alignment:
Q  119 taaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||  |||||||||| |||||||||||||||||||||||    
T  51139798 taaaaccgacacaaaattgtataaaatctcgcaaaatagaccta 51139755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 43060177 - 43060239
Alignment:
Q  15 tagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctatga 77  Q
    |||||||||  ||||| |||||| ||||||||||||||||||   |||||||| |||||||||    
T  43060177 tagaaccgctgaaaacccaaaccgttgaaaaattgtttaaaaccccgtaaaattgacctatga 43060239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 162
Target Start/End: Original strand, 1243675 - 1243704
Alignment:
Q  133 aattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||||||||||||||||||||||||    
T  1243675 aattgtttaaaatctcgcaaaatagaccta 1243704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 15084011 - 15084052
Alignment:
Q  117 actaaaaccgcaacaaaattgtttaaaatctcgcaaaataga 158  Q
    |||||||  ||||||||||||||||||||||| |||||||||    
T  15084011 actaaaattgcaacaaaattgtttaaaatctcacaaaataga 15084052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 919641 - 919685
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  919641 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 919685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 8086456 - 8086412
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  8086456 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 8086412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 9246945 - 9246985
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaataga 158  Q
    |||||||||  |||||||||| |||||||||||||||||||    
T  9246945 ctaaaaccgatacaaaattgtataaaatctcgcaaaataga 9246985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 25299019 - 25299063
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  25299019 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 25299063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 32540638 - 32540682
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  |||||||||| |||||||||| ||||||||||||    
T  32540638 ctaaaaccgacacaaaattgtataaaatctcgtaaaatagaccta 32540682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 40567192 - 40567148
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  40567192 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 40567148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 44709492 - 44709520
Alignment:
Q  237 tgttagagtgttacttttcccaccctatg 265  Q
    |||||||||||||||||||||||||||||    
T  44709492 tgttagagtgttacttttcccaccctatg 44709520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 45837070 - 45837026
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  45837070 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 45837026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 48708348 - 48708392
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  48708348 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 48708392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 49130326 - 49130281
Alignment:
Q  117 actaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  49130326 actaaaaccgcaacaaaattgtttaaaatctcgcaaaataaaccta 49130281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 15632383 - 15632313
Alignment:
Q  7 gtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctatga 77  Q
    |||||||||  ||||||| ||||||  ||||||||||||||||||||| |  |||||||||||||||||||    
T  15632383 gtcacttttgaaaccgccgaaaactataaccattgaaaaattgtttaacacctcgtaaaatagacctatga 15632313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 49130458 - 49130392
Alignment:
Q  8 tcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagaccta 74  Q
    |||||||||||||| |  ||||||||||||| |||||| ||||||||||| | |||| |||||||||    
T  49130458 tcacttttagaacccctgaaaactcaaaccaatgaaaatttgtttaaaaacttgtaatatagaccta 49130392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 5734288 - 5734218
Alignment:
Q  5 atgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctat 75  Q
    |||||||||||  ||||||  ||||||  |||| ||||||| ||||||||| | |||||||||||||||||    
T  5734288 atgtcacttttgaaaccgcggaaaactataaccgttgaaaatttgtttaaagactcgtaaaatagacctat 5734218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 15632247 - 15632201
Alignment:
Q  116 aactaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||||   |||||||||||||||||||| ||||||||||||    
T  15632247 aactaaaaccgtcgcaaaattgtttaaaatctcgtaaaatagaccta 15632201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 27270466 - 27270425
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagac 159  Q
    |||||||||  |||||||||| ||||||||||||||||||||    
T  27270466 ctaaaaccgacacaaaattgtataaaatctcgcaaaatagac 27270425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 36801906 - 36801959
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagacctaggatcgtta 171  Q
    |||||||||  |||||||| | |||||||||||||||||||| || ||||||||    
T  36801906 ctaaaaccgacacaaaattatataaaatctcgcaaaatagacttatgatcgtta 36801959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 13233456 - 13233412
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  13233456 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 13233412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 15632253 - 15632201
Alignment:
Q  22 gccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagaccta 74  Q
    |||||||||| ||||| | | ||||||||||||||  ||||||||||||||||    
T  15632253 gccaaaaactaaaaccgtcgcaaaattgtttaaaatctcgtaaaatagaccta 15632201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 18491413 - 18491369
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  18491413 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 18491369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 41832603 - 41832559
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  41832603 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 41832559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 44134719 - 44134675
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  44134719 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 44134675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 44745522 - 44745566
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  44745522 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 44745566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 50767147 - 50767103
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  50767147 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 50767103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 54795774 - 54795818
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  |||||||||| |||||||| ||||||||||||||    
T  54795774 ctaaaaccgacacaaaattgtataaaatcttgcaaaatagaccta 54795818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 1299 - 1371
Alignment:
Q  5 atgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctatga 77  Q
    ||||||||||||||||  || |||||  ||||| |||||||||| |||||||| |||||||||||||||||||    
T  1299 atgtcacttttagaacaaccgaaaacctaaaccgttgaaaaattatttaaaaactcgtaaaatagacctatga 1371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 159
Target Start/End: Original strand, 1451 - 1479
Alignment:
Q  131 aaaattgtttaaaatctcgcaaaatagac 159  Q
    |||||||||||||||||||||||||||||    
T  1451 aaaattgtttaaaatctcgcaaaatagac 1479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 25090224 - 25090148
Alignment:
Q  1 tcacatgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctatga 77  Q
    |||||||||||||||| ||||| | ||||  |||||| ||||||||| ||||||||| |||||||||| ||||||||    
T  25090224 tcacatgtcacttttaaaaccgtcgaaaatccaaaccgttgaaaaatggtttaaaaactcgtaaaataaacctatga 25090148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 8727953 - 8727905
Alignment:
Q  26 aaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagaccta 74  Q
    |||||| |||||||||||||||||||||||   ||||||||||||||||    
T  8727953 aaaactaaaaccattgaaaaattgtttaaagtttcgtaaaatagaccta 8727905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 26873815 - 26873772
Alignment:
Q  119 taaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||  |||||||||| |||||||||||||||||||||||    
T  26873815 taaaaccgacacaaaattgtataaaatctcgcaaaatagaccta 26873772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 6429048 - 6429094
Alignment:
Q  116 aactaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||||||  |||||||||||||| ||||||||||| ||||||    
T  6429048 aactaaaaccgctgcaaaattgtttaaactctcgcaaaatggaccta 6429094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 22566626 - 22566667
Alignment:
Q  119 taaaaccgcaacaaaattgtttaaaatctcgcaaaatagacc 160  Q
    ||||||||  |||||||||| |||||||||||||||||||||    
T  22566626 taaaaccgacacaaaattgtataaaatctcgcaaaatagacc 22566667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 17167093 - 17167049
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  17167093 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 17167049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 22723708 - 22723752
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  22723708 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 22723752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 23469328 - 23469372
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  23469328 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 23469372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 31065555 - 31065599
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  31065555 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 31065599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 44142987 - 44142943
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  44142987 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 44142943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 44723995 - 44724039
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  44723995 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 44724039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 13405269 - 13405341
Alignment:
Q  5 atgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctatga 77  Q
    |||||||||||| ||||||| |||| | ||||  ||||||||||||||||||  ||| |||||||||||||||    
T  13405269 atgtcacttttaaaaccgccgaaaattaaaactgttgaaaaattgtttaaaatctcgcaaaatagacctatga 13405341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 13405408 - 13405461
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagacctaggatcgtta 171  Q
    |||||||||  |||||||||| |||||||||||||||||||||||  |||||||    
T  13405408 ctaaaaccgacacaaaattgtataaaatctcgcaaaatagacctataatcgtta 13405461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 12698607 - 12698564
Alignment:
Q  119 taaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||  |||||||||| |||||||||||||||||||||||    
T  12698607 taaaaccgacacaaaattgtataaaatctcgcaaaatagaccta 12698564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 162
Target Start/End: Original strand, 13405307 - 13405338
Alignment:
Q  131 aaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||||||||||||||||||||||||||    
T  13405307 aaaattgtttaaaatctcgcaaaatagaccta 13405338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 26468561 - 26468518
Alignment:
Q  119 taaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||  |||||||||| |||||||||||||||||||||||    
T  26468561 taaaaccgacacaaaattgtataaaatctcgcaaaatagaccta 26468518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 7022044 - 7022000
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  7022044 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 7022000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 15469316 - 15469272
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  15469316 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 15469272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 34127610 - 34127570
Alignment:
Q  119 taaaaccgcaacaaaattgtttaaaatctcgcaaaatagac 159  Q
    ||||||||  |||||||||| ||||||||||||||||||||    
T  34127610 taaaaccgatacaaaattgtataaaatctcgcaaaatagac 34127570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 33689 - 33755
Alignment:
Q  9 cacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctat 75  Q
    |||||||||||| | | |||||| ||||| ||||||||||||||||||  ||||||||| |||||||    
T  33689 cacttttagaactggcgaaaactaaaaccgttgaaaaattgtttaaaatctcgtaaaatggacctat 33755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 25270006 - 25269933
Alignment:
Q  1 tcacatgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagaccta 74  Q
    ||||||||||||||||||||| || ||||  |||||   |||||| ||||||||||| ||||||||| ||||||    
T  25270006 tcacatgtcacttttagaaccaccgaaaatccaaactgctgaaaatttgtttaaaaactcgtaaaattgaccta 25269933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 7413145 - 7413101
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  |||||||||| |||||||||||||||||||||||    
T  7413145 ctaaaaccgacacaaaattgtataaaatctcgcaaaatagaccta 7413101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 14164721 - 14164681
Alignment:
Q  116 aactaaaaccgcaacaaaattgtttaaaatctcgcaaaata 156  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  14164721 aactaaaaccgctgcaaaattgtttaaaatctcgcaaaata 14164681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 17032988 - 17033032
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||    
T  17032988 ctaaaaccgcagcaaaattgtttaaaatctcataaaatagaccta 17033032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 17563424 - 17563468
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||    
T  17563424 ctaaaaccgcagcaaaattgtttaaaatctcataaaatagaccta 17563468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 162
Target Start/End: Complemental strand, 8996561 - 8996530
Alignment:
Q  131 aaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||||||||||||||||||||||||||    
T  8996561 aaaattgtttaaaatctcgcaaaatagaccta 8996530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 43117461 - 43117418
Alignment:
Q  119 taaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    ||||||||  |||||||||| |||||||||||||||||||||||    
T  43117461 taaaaccgacacaaaattgtataaaatctcgcaaaatagaccta 43117418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 8996594 - 8996529
Alignment:
Q  9 cacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctat 75  Q
    |||||||  |||||||||||||| |||| | |||||||||||||||||  ||| |||||||||||||    
T  8996594 cacttttgaaaccgccaaaaactaaaac-actgaaaaattgtttaaaatctcgcaaaatagacctat 8996529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 2317164 - 2317131
Alignment:
Q  129 acaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||| |||||||||||||||||||||||    
T  2317164 acaaaattgtataaaatctcgcaaaatagaccta 2317131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 25642778 - 25642831
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagacctaggatcgtta 171  Q
    |||||||||  |||||||| | ||||||||||||||||||||||| | ||||||    
T  25642778 ctaaaaccgacacaaaattatataaaatctcgcaaaatagacctatggtcgtta 25642831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 3886713 - 3886757
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  3886713 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 3886757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 5590106 - 5590150
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  5590106 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 5590150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 7012564 - 7012520
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  7012564 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 7012520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 7422094 - 7422138
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  |||||||||| ||||||||||||||||| |||||    
T  7422094 ctaaaaccgacacaaaattgtataaaatctcgcaaaataaaccta 7422138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 22658279 - 22658323
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  22658279 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 22658323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 36257516 - 36257588
Alignment:
Q  5 atgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctatga 77  Q
    |||||| ||||||||| | | |||||| ||||  ||||||||||||||||||| ||| ||||| |||| ||||    
T  36257516 atgtcatttttagaactgtcgaaaactaaaactgttgaaaaattgtttaaaaactcgcaaaatggaccaatga 36257588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 38567356 - 38567312
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  38567356 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 38567312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 42556026 - 42556070
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  42556026 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 42556070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 43117576 - 43117532
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  43117576 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 43117532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 8074283 - 8074327
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  |||||||||| |||||||||||||||||||||||    
T  8074283 ctaaaaccgacacaaaattgtataaaatctcgcaaaatagaccta 8074327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 36244240 - 36244282
Alignment:
Q  129 acaaaattgtttaaaatctcgcaaaatagacctaggatcgtta 171  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||    
T  36244240 acaaaattgtttaaaatctcacaaaatagatctatgatcgtta 36244282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 7440412 - 7440456
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  7440412 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 7440456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 9737752 - 9737804
Alignment:
Q  119 taaaaccgcaacaaaattgtttaaaatctcgcaaaatagacctaggatcgtta 171  Q
    ||||||||  |||||||||  |||||||||||||||||||||||  |||||||    
T  9737752 taaaaccgacacaaaattgcataaaatctcgcaaaatagacctataatcgtta 9737804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 32304584 - 32304628
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  32304584 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 32304628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 41817676 - 41817636
Alignment:
Q  34 aaccattgaaaaattgtttaaaaagtcgtaaaatagaccta 74  Q
    |||||||||||||||||||||| | |||||||||| |||||    
T  41817676 aaccattgaaaaattgtttaaagactcgtaaaatataccta 41817636  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 19158 - 19107
Alignment:
Q  119 taaaaccgcaacaaaattgtttaaaatctcgcaaaatagacctaggatcgtt 170  Q
    ||||||||  |||||||||  ||||||||||||||||||||||| |||||||    
T  19158 taaaaccgacacaaaattgcataaaatctcgcaaaatagacctatgatcgtt 19107  T

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Target: scaffold1390 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold1390
Description:

Target: scaffold1390; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 805 - 735
Alignment:
Q  5 atgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctat 75  Q
    ||||||||||||||||  || |||||  ||||  |||||||||| |||||||| |||||||||| ||||||    
T  805 atgtcacttttagaacaaccgaaaacctaaactgttgaaaaattatttaaaaactcgtaaaatacacctat 735  T

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Target: scaffold1390; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 159
Target Start/End: Complemental strand, 653 - 625
Alignment:
Q  131 aaaattgtttaaaatctcgcaaaatagac 159  Q
    |||||||||||||||||||||||||||||    
T  653 aaaattgtttaaaatctcgcaaaatagac 625  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 65274 - 65230
Alignment:
Q  118 ctaaaaccgcaacaaaattgtttaaaatctcgcaaaatagaccta 162  Q
    |||||||||  | |||||||| |||||||||||||||||||||||    
T  65274 ctaaaaccgacataaaattgtataaaatctcgcaaaatagaccta 65230  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 36056 - 35984
Alignment:
Q  5 atgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaagtcgtaaaatagacctatga 77  Q
    |||||||||||  ||| |||||||||  ||||  ||||||||||||||||||  ||  |||||||||||||||    
T  36056 atgtcacttttgaaactgccaaaaacctaaactgttgaaaaattgtttaaaacctcccaaaatagacctatga 35984  T

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