View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_high_4 (Length: 504)
Name: NF16701_high_4
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 41 - 494
Target Start/End: Original strand, 40570490 - 40570944
Alignment:
| Q |
41 |
tgacctgttctacctttaaatcttaaacaactagttagaaacgttgcaatcactgtcgccaaaaactaaagttacattaaaataaatattagacagacca |
140 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40570490 |
tgacctgttctacctttaaatcttaaacaactagttagaaacgttgcaatcactgttgccaaaaactaaagttacattaaaataaatattagacagacca |
40570589 |
T |
|
| Q |
141 |
tcttaatttgatcattcgattccgtaggaaaaatcagtcattttgatttttctatttt-aaattgtattacaaagtagaataaatactaaacaaattcat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| |
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| T |
40570590 |
tcttaatttgatcattcgattccgtaggaaaaatcagtcattttgatttttctatttttaaattgcattacaaagtagaataaatactaaacaaatccat |
40570689 |
T |
|
| Q |
240 |
ggatttttgtaacgatgaacctgnnnnnnntagcaaagacatggatgtgcactcaaaacagctgctgctaatggtggtcgctgtcatttatacaaaagtt |
339 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40570690 |
ggatttttgtaacgatgaacctgaaaaaaatagcaaagacatggatgtgcactcaaaacagctgctgctaatggtggtcgctgtcatttatacaaaagtt |
40570789 |
T |
|
| Q |
340 |
gcgactcaaccggtgtcactaccaaattgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttctctagacaaca |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40570790 |
gcgactcaaccggtgtcactaccaaattgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttctctagacaaca |
40570889 |
T |
|
| Q |
440 |
catttctcattgattgcaacaaaacatcttcaacctcaacagacgtaccattctt |
494 |
Q |
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| T |
40570890 |
cctttctcattgattgcaacaaaacatcttcaacctcaacagacgtaccattctt |
40570944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 38 - 473
Target Start/End: Original strand, 40565790 - 40566230
Alignment:
| Q |
38 |
ttctgacctgttctacctttaaatcttaaacaactagttagaaacgttgcaatcactgtcgccaaaaactaaagttacattaaaataaatattagacaga |
137 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||| ||||||| ||||||| | |
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| T |
40565790 |
ttctgacctattctacttttaaaacttaaacaactgattagagacattgcaatcactgttaccaaaaactaaagttacattataataaatgttagacaaa |
40565889 |
T |
|
| Q |
138 |
-ccatctt-aatttgatcattcgattccgta--ggaaaaatcagtcattttgatttttctattttaaattgtattacaa--agtagaa-taaatactaaa |
230 |
Q |
| |
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|| | || ||||||||||||| ||||| || |||||| ||| ||||||||| ||||||||| | || |||||| || | || ||||||||||| |
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| T |
40565890 |
accgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaagg---ttacaaggagaataaataaatactaaa |
40565986 |
T |
|
| Q |
231 |
caaattc-atggatttttgtaacgatgaacctgnnnnnnntagcaaagacatggatgtgcactcaaaacagctgctgctaatggtggtcgctgtcattta |
329 |
Q |
| |
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|||| || | |||||| | || ||||||||||| |||||||| ||||| ||||||||||||||| ||||||| ||||||| ||||||||||| |
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| T |
40565987 |
caaaatctaaggatttgtataccgatgaacctgaaaaaaatagcaaagccatggctgtgcactcaaaacaattgctgctgatggtggctgctgtcattta |
40566086 |
T |
|
| Q |
330 |
tacaaaagttgcgactcaaccggtgtcactaccaaattgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttct |
429 |
Q |
| |
|
|| ||||| ||| ||||||||| ||||||| |||||||| |||||||| ||||| ||||| |||||||| |||||||||||||| || |||||||| |
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| T |
40566087 |
tataaaagctgcaactcaaccgatgtcacttccaaattgcccaacaaaatgtggttccgtcaccattccctttccatttggaaccactaagaattgttcc |
40566186 |
T |
|
| Q |
430 |
ctagacaacacatttctcattgattgcaacaaaacatcttcaac |
473 |
Q |
| |
|
|| ||||| || ||||||||| |||||||||||||||||||||| |
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|
| T |
40566187 |
ctcgacaatacctttctcattaattgcaacaaaacatcttcaac |
40566230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 360 - 494
Target Start/End: Original strand, 40577233 - 40577367
Alignment:
| Q |
360 |
accaaattgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttctctagacaacacatttctcattgattgcaac |
459 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |
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| T |
40577233 |
accaaactgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaaggattgttctctagacaacacctttctcatcgattgcaac |
40577332 |
T |
|
| Q |
460 |
aaaacatcttcaacctcaacagacgtaccattctt |
494 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
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| T |
40577333 |
aaaacatcttcaacctcaacagaggtaccattctt |
40577367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 311 - 467
Target Start/End: Original strand, 40595451 - 40595607
Alignment:
| Q |
311 |
tggtggtcgctgtcatttatacaaaagttgcgactcaaccggtgtcactaccaaattgtccaacaaagtgtggcaatgtcactattcccttcccatttgg |
410 |
Q |
| |
|
|||| ||||||||| |||||||||||| || ||||||||| ||||||||||||| ||| || |||||||||| ||| || |||||||||||||| |
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| T |
40595451 |
tggttgtcgctgtcttttatacaaaagcagcaactcaaccgatgtcactaccaaactgtacagcaaagtgtggttccatcaaaatccccttcccatttgg |
40595550 |
T |
|
| Q |
411 |
aaccaccaataattgttctctagacaacacatttctcattgattgcaacaaaacatc |
467 |
Q |
| |
|
|| |||||| |||| || ||||||||| | || ||||| |||||||||||||||| |
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|
| T |
40595551 |
aatcaccaaagattgctccctagacaacgctttcctcatcaattgcaacaaaacatc |
40595607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 412
Target Start/End: Original strand, 40600110 - 40600196
Alignment:
| Q |
326 |
tttatacaaaagttgcgactcaaccggtgtcactaccaaattgtccaacaaagtgtggcaatgtcactattcccttcccatttggaa |
412 |
Q |
| |
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||||||||||||| || | |||||| ||||||||||||| |||| |||||| ||||| |||||| || ||||| |||||||||| |
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| T |
40600110 |
tttatacaaaagtagcaagtcaacctatgtcactaccaaactgtcaaacaaaatgtggttctgtcaccataccctttccatttggaa |
40600196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 270 - 494
Target Start/End: Original strand, 8490386 - 8490611
Alignment:
| Q |
270 |
tagcaaagacatggatgtgcactcaaaacagctgctgctaatggt-ggtcgctgtcatttatacaaaagttgcgactcaaccggtgtcactaccaaattg |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||| |||||||||||| || |
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|
| T |
8490386 |
tagcaaagacatggatgtgcactcaaaacagctgctgctaatggttggttgctgtcatttatacaaaagtagggactcaaccggcgtcactaccaaactg |
8490485 |
T |
|
| Q |
369 |
tccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttctctagacaacacatttctcattgattgcaacaaaacatct |
468 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| ||| |
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|
| T |
8490486 |
tccaacaaagtgtggctctgtcactattcccttcccatttggaaccaccaagagttgttctctagacaacacctttctcattgattgcaacaaaacgtct |
8490585 |
T |
|
| Q |
469 |
tcaacctcaacagacgtaccattctt |
494 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
8490586 |
tcaacctcaacagacgtaccattctt |
8490611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 8490288 - 8490373
Alignment:
| Q |
114 |
acattaaaataaatattagacaga-ccatcttaatttgatcattcgattccgtaggaaaaatcagtcattttgatttttctatttt |
198 |
Q |
| |
|
|||||| |||||||| |||||| | |||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
8490288 |
acattataataaataatagacaaaaccatcttaatttgatcattcaattccataggaaaaatcagtcattttgacttttctatttt |
8490373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 8490228 - 8490273
Alignment:
| Q |
84 |
ttgcaatcactgtcgccaaaaactaaagttacattaaaataaatat |
129 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
8490228 |
ttgcaatcactgttgccaaaaactaaagttacattataataaatat |
8490273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 371 - 470
Target Start/End: Complemental strand, 2017552 - 2017453
Alignment:
| Q |
371 |
caacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttctctagacaacacatttctcattgattgcaacaaaacatcttc |
470 |
Q |
| |
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|||||||||||||| |||||| |||||||| ||||||||||||||||| ||||||| | |||||||| |||||||| |||||| |||| ||||||| |
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| T |
2017552 |
caacaaagtgtggctctgtcacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcataaattgcaccaaagcatcttc |
2017453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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