View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16701_high_6 (Length: 483)

Name: NF16701_high_6
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16701_high_6
NF16701_high_6
[»] chr6 (19 HSPs)
chr6 (13-470)||(26654465-26654927)
chr6 (13-470)||(26760435-26760897)
chr6 (173-470)||(27334389-27334695)
chr6 (173-470)||(27395129-27395435)
chr6 (274-449)||(27605583-27605758)
chr6 (121-249)||(27339638-27339767)
chr6 (121-249)||(27400378-27400507)
chr6 (13-94)||(27339283-27339364)
chr6 (13-94)||(27400023-27400104)
chr6 (274-383)||(31282887-31282997)
chr6 (330-390)||(26652612-26652671)
chr6 (330-390)||(26758580-26758639)
chr6 (351-439)||(25105429-25105520)
chr6 (402-459)||(27339949-27340006)
chr6 (402-459)||(27400689-27400746)
chr6 (357-443)||(28242299-28242388)
chr6 (351-408)||(27611648-27611705)
chr6 (13-69)||(27593746-27593802)
chr6 (13-69)||(27678268-27678324)
[»] chr1 (2 HSPs)
chr1 (121-249)||(28164750-28164872)
chr1 (116-249)||(28128885-28129012)
[»] scaffold0038 (1 HSPs)
scaffold0038 (357-443)||(42461-42550)


Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 13 - 470
Target Start/End: Complemental strand, 26654927 - 26654465
Alignment:
13 aatatgacctcttgaactaaatgattaattaatcatgcacacacaattattagtgtaagttgcaatattgaatgcttaattatacaattgtaacataatt 112  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26654927 aatatgacctcttgaactaaatgattaattaaccatgcacacacaattattagtgtaagttgcaatattgaatgcttaattatacaattgtaacataatt 26654828  T
113 tgctagttaacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacacttt-----tacta 207  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||    
26654827 tgttagttaacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacactttaattttacta 26654728  T
208 ccatgtcaagtccgaaacttccttctcattttccatgtggactctttcctttgaattttctacatctgtacccatcaatgaaggatggataggttgatga 307  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
26654727 ccatgtcaagtccgaaacttccttctcatcttccatgtggacactttcctttaaattttctacatctgtacccatcaatgaaggatggataggttgatga 26654628  T
308 agactattaatacttatctaaaccaatgtgtgccttaaaaattaatgtcaatgccttaaaaatcaaactgacattttcaagtgagaccttagaaatgaat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26654627 agactattaatacttatctaaaccaatgtgtgccttaaaaattaatgtcaatgccttaaaaatcaaactgacattttcaagtgagaccttagaaatgaat 26654528  T
408 tgacagctgtgatattttgtttagacttcaaaagtcaaaagtggttctgatatgtattatgtg 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
26654527 tgacagctgtgatattttgtttagacttcaaaagtcaaaagtggttctgatatatattatgtg 26654465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 13 - 470
Target Start/End: Complemental strand, 26760897 - 26760435
Alignment:
13 aatatgacctcttgaactaaatgattaattaatcatgcacacacaattattagtgtaagttgcaatattgaatgcttaattatacaattgtaacataatt 112  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26760897 aatatgacctcttgaactaaatgattaattaaccatgcacacacaattattagtgtaagttgcaatattgaatgcttaattatacaattgtaacataatt 26760798  T
113 tgctagttaacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacacttt-----tacta 207  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||    
26760797 tgttagttaacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacactttaattttacta 26760698  T
208 ccatgtcaagtccgaaacttccttctcattttccatgtggactctttcctttgaattttctacatctgtacccatcaatgaaggatggataggttgatga 307  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
26760697 ccatgtcaagtccgaaacttccttctcatcttccatgtggacactttcctttaaattttctacatctgtacccatcaatgaaggatggataggttgatga 26760598  T
308 agactattaatacttatctaaaccaatgtgtgccttaaaaattaatgtcaatgccttaaaaatcaaactgacattttcaagtgagaccttagaaatgaat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26760597 agactattaatacttatctaaaccaatgtgtgccttaaaaattaatgtcaatgccttaaaaatcaaactgacattttcaagtgagaccttagaaatgaat 26760498  T
408 tgacagctgtgatattttgtttagacttcaaaagtcaaaagtggttctgatatgtattatgtg 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
26760497 tgacagctgtgatattttgtttagacttcaaaagtcaaaagtggttctgatatatattatgtg 26760435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 173 - 470
Target Start/End: Original strand, 27334389 - 27334695
Alignment:
173 tcaagttttggctaccaaagtcaacacttttactacca-tgtcaagtccgaaacttccttctcattttccatgtggac---tct-------ttcctttga 261  Q
    ||||||||  |||||||||||| ||||||||||||| | ||||||||| ||||||||||||| || ||||||||||||   | |       |||||||||    
27334389 tcaagtttcagctaccaaagtctacacttttactactaatgtcaagtctgaaacttccttcttatcttccatgtggaccaatgtgggacacttcctttga 27334488  T
262 attttctacatctgtacccatcaatgaaggatggataggttgatgaagactattaatacttatctaaaccaatgtgtgccttaaaaattaatgtcaatgc 361  Q
    |||    || |  |||||  |||||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||| ||||| ||||||||||     
27334489 attagtaacgt--gtaccggtcaatgaaggatggataggtggatgaagactagtaatacttatgtaaaccaatgcgtgcctttaaaatcaatgtcaatga 27334586  T
362 cttaaaaatcaaactgacattttcaagtgagaccttagaaatgaattgacagctgtgatattttgtttagacttcaaaagtcaaaagtggttctgatatg 461  Q
    |||||||||||||||||||||||||| || | || || |||| |||  | | |||||||||||||||||||| |||||||| |||||| ||||||||||     
27334587 cttaaaaatcaaactgacattttcaaatgggtccctaaaaattaatcaagaactgtgatattttgtttagacctcaaaagttaaaagtcgttctgatatt 27334686  T
462 tattatgtg 470  Q
    |||||||||    
27334687 tattatgtg 27334695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 173 - 470
Target Start/End: Original strand, 27395129 - 27395435
Alignment:
173 tcaagttttggctaccaaagtcaacacttttactacca-tgtcaagtccgaaacttccttctcattttccatgtggac---tct-------ttcctttga 261  Q
    ||||||||  |||||||||||| ||||||||||||| | ||||||||| ||||||||||||| || ||||||||||||   | |       |||||||||    
27395129 tcaagtttcagctaccaaagtctacacttttactactaatgtcaagtctgaaacttccttcttatcttccatgtggaccaatgtgggacacttcctttga 27395228  T
262 attttctacatctgtacccatcaatgaaggatggataggttgatgaagactattaatacttatctaaaccaatgtgtgccttaaaaattaatgtcaatgc 361  Q
    |||    || |  |||||  |||||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||| ||||| ||||||||||     
27395229 attagtaacgt--gtaccggtcaatgaaggatggataggtggatgaagactagtaatacttatgtaaaccaatgcgtgcctttaaaatcaatgtcaatga 27395326  T
362 cttaaaaatcaaactgacattttcaagtgagaccttagaaatgaattgacagctgtgatattttgtttagacttcaaaagtcaaaagtggttctgatatg 461  Q
    |||||||||||||||||||||||||| || | || || |||| |||  | | |||||||||||||||||||| |||||||| |||||| ||||||||||     
27395327 cttaaaaatcaaactgacattttcaaatgggtccctaaaaattaatcaagaactgtgatattttgtttagacctcaaaagttaaaagtcgttctgatatt 27395426  T
462 tattatgtg 470  Q
    |||||||||    
27395427 tattatgtg 27395435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 274 - 449
Target Start/End: Original strand, 27605583 - 27605758
Alignment:
274 tgtacccatcaatgaaggatggataggttgatgaagactattaatacttatctaaaccaatgtgtgccttaaaaattaatgtcaatgccttaaaaatcaa 373  Q
    |||| |||| |||||||||||||||||| ||||||||||| |||||||| | |||| ||||||||||||||||| | ||||| |||||||||||| ||||    
27605583 tgtaaccatgaatgaaggatggataggtggatgaagactagtaatacttctgtaaatcaatgtgtgccttaaaagtcaatgttaatgccttaaaagtcaa 27605682  T
374 actgacattttcaagtgagaccttagaaatgaattgacagctgtgatattttgtttagacttcaaaagtcaaaagt 449  Q
    ||||| ||||||||||| ||   || ||||||||||| |||||||||||||||||||||| | |||||||||||||    
27605683 actgaaattttcaagtgggatgctaaaaatgaattgagagctgtgatattttgtttagaccttaaaagtcaaaagt 27605758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 121 - 249
Target Start/End: Original strand, 27339638 - 27339767
Alignment:
121 aacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacacttttactac--catgtcaagt 218  Q
    ||||||||||||||| ||||||| ||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||  |||||  |||    
27339638 aacaagattagggtaacatagatatgaaatattctttccttcatttattttctcaagttttggctacc-aagtcaacacttttactaccgcatgttgagt 27339736  T
219 ccgaaacttccttctcattttccatgtggac 249  Q
    | ||||||| |||||||| ||||||||||||    
27339737 ctgaaactttcttctcatcttccatgtggac 27339767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 121 - 249
Target Start/End: Original strand, 27400378 - 27400507
Alignment:
121 aacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacacttttactac--catgtcaagt 218  Q
    ||||||||||||||| ||||||| ||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||  |||||  |||    
27400378 aacaagattagggtaacatagatatgaaatattctttccttcatttattttctcaagttttggctacc-aagtcaacacttttactaccgcatgttgagt 27400476  T
219 ccgaaacttccttctcattttccatgtggac 249  Q
    | ||||||| |||||||| ||||||||||||    
27400477 ctgaaactttcttctcatcttccatgtggac 27400507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 27339283 - 27339364
Alignment:
13 aatatgacctcttgaactaaatgattaattaatcatgcacacacaattattagtgtaagttgcaatattgaatgcttaatta 94  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||||||||||| ||||  || |||||||||||||||    
27339283 aatatgacctgtttaactaaatgattaattaaccatgcacacacaattattagtgtaggttgttatgttgaatgcttaatta 27339364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 27400023 - 27400104
Alignment:
13 aatatgacctcttgaactaaatgattaattaatcatgcacacacaattattagtgtaagttgcaatattgaatgcttaatta 94  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||||||||||| ||||  || |||||||||||||||    
27400023 aatatgacctgtttaactaaatgattaattaaccatgcacacacaattattagtgtaggttgttatgttgaatgcttaatta 27400104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 383
Target Start/End: Complemental strand, 31282997 - 31282887
Alignment:
274 tgtacccatcaatgaaggatggataggttgatgaagactattaatacttatctaaaccaatgtg--tgccttaaaaattaatgtcaatgccttaaaaatc 371  Q
    |||||||||||||||||| ||||||||| ||||||||| | ||| |||| | | ||||||||||  |   |||||||| |||||||||||||||||||||    
31282997 tgtacccatcaatgaagg-tggataggtggatgaagacaagtaacacttttgtcaaccaatgtgaatcttttaaaaatcaatgtcaatgccttaaaaatc 31282899  T
372 aaactgacattt 383  Q
    ||| ||||||||    
31282898 aaaatgacattt 31282887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 26652671 - 26652612
Alignment:
330 ccaatgtgtgccttaaaaattaatgtcaatgccttaaaaatcaaactgacattttcaagtg 390  Q
    |||||||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||    
26652671 ccaatgtgtgccttaaaaatcaatgtcaatgcctt-aaaatcaaagtgacatttccaagtg 26652612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 26758639 - 26758580
Alignment:
330 ccaatgtgtgccttaaaaattaatgtcaatgccttaaaaatcaaactgacattttcaagtg 390  Q
    |||||||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||    
26758639 ccaatgtgtgccttaaaaatcaatgtcaatgcctt-aaaatcaaagtgacatttccaagtg 26758580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 439
Target Start/End: Complemental strand, 25105520 - 25105429
Alignment:
351 aatgtcaatgccttaaaaatcaaactgacattttcaagtgagaccttagaaatgaattgacagct---gtgatattttgtttagacttcaaa 439  Q
    ||||| |||| |||||||||||||||||||||  |||||| |||| || ||||||||||| ||||   |||||||||||||| ||| |||||    
25105520 aatgtgaatgacttaaaaatcaaactgacattcccaagtgggaccctaaaaatgaattgagagcttaagtgatattttgtttggacctcaaa 25105429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 27339949 - 27340006
Alignment:
402 atgaattgacagctgtgatattttgtttagacttcaaaagtcaaaagtggttctgata 459  Q
    ||||||||  |||||||||||||||||||||| |||||||||||||||  ||||||||    
27339949 atgaattgcgagctgtgatattttgtttagacctcaaaagtcaaaagtctttctgata 27340006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 27400689 - 27400746
Alignment:
402 atgaattgacagctgtgatattttgtttagacttcaaaagtcaaaagtggttctgata 459  Q
    ||||||||  |||||||||||||||||||||| |||||||||||||||  ||||||||    
27400689 atgaattgcgagctgtgatattttgtttagacctcaaaagtcaaaagtctttctgata 27400746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 443
Target Start/End: Original strand, 28242299 - 28242388
Alignment:
357 aatgccttaaaaatcaaactgacattttcaagtgagaccttagaaatgaattgacagct---gtgatattttgtttagacttcaaaagtc 443  Q
    |||||||||||| ||||| |||||||||||  || |||| || ||||||||||| ||||   || ||||||||||||||| |||||||||    
28242299 aatgccttaaaagtcaaattgacattttcagatgggaccctaaaaatgaattgaaagcttaagtaatattttgtttagacctcaaaagtc 28242388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 27611648 - 27611705
Alignment:
351 aatgtcaatgccttaaaaatcaaactgacattttcaagtgagaccttagaaatgaatt 408  Q
    ||||| |||||||||||||||||||| ||||||||| ||| |||| || |||||||||    
27611648 aatgtgaatgccttaaaaatcaaacttacattttcaggtgggaccctaaaaatgaatt 27611705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 27593746 - 27593802
Alignment:
13 aatatgacctcttgaactaaatgattaattaatcatgcacacacaattattagtgta 69  Q
    ||||| ||| ||||||| ||||| |||||||| ||||||||||||||||||| ||||    
27593746 aatattaccacttgaaccaaatggttaattaaccatgcacacacaattattattgta 27593802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 27678324 - 27678268
Alignment:
13 aatatgacctcttgaactaaatgattaattaatcatgcacacacaattattagtgta 69  Q
    ||||| ||| ||||||| ||||| |||||||| ||||||||||||||||||| ||||    
27678324 aatattaccacttgaaccaaatggttaattaaccatgcacacacaattattattgta 27678268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 249
Target Start/End: Original strand, 28164750 - 28164872
Alignment:
121 aacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacacttttactaccatgtcaagtcc 220  Q
    ||||||| |||| |||||||||| || |||||||| | || ||| |||||||| |||||||||||||| ||||| |||||||||||||     |||| |     
28164750 aacaagagtaggttagcatagatatgcaatattatctgttccatttattttctgaagttttggctacc-aagtctacacttttactac-----caagact 28164843  T
221 gaaacttccttctcattttccatgtggac 249  Q
    |||||||||||||||| |||| |||||||    
28164844 gaaacttccttctcatcttccgtgtggac 28164872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 249
Target Start/End: Original strand, 28128885 - 28129012
Alignment:
116 tagttaacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacacttttactaccatgtca 215  Q
    ||||||||| || |||| |||||| ||| || |||||| | |||| ||| |||||||| |||||||||||||| ||||| |||||||||||||     ||    
28128885 tagttaacatgagtaggctagcatggatatgcaatattctctcttccatttattttctgaagttttggctacc-aagtctacacttttactac-----ca 28128978  T
216 agtccgaaacttccttctcattttccatgtggac 249  Q
    || | |||||||||||||||| |||| |||||||    
28128979 agactgaaacttccttctcatcttccgtgtggac 28129012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 443
Target Start/End: Original strand, 42461 - 42550
Alignment:
357 aatgccttaaaaatcaaactgacattttcaagtgagaccttagaaatgaattgacagct---gtgatattttgtttagacttcaaaagtc 443  Q
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42461 aatgccttaaaagtcaaattgacattttcagatgggaccctaaaaatgaattgaaagcttaagtaatattttgtttagacctcaaaagtc 42550  T

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