View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_10 (Length: 398)
Name: NF16701_low_10
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 34942866 - 34943245
Alignment:
| Q |
1 |
ttcaattagctagagctggtttagatctatacttatttcttcacattcaatacatatttctttgctatttaaaaaacaatgattaattaagtcattcccc |
100 |
Q |
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| T |
34942866 |
ttcaattagctagagctggtttagatctatacttatatcttcacattcaatacatatttctttgctatttaaaaaacaatgattaattaagtcattcccc |
34942965 |
T |
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| Q |
101 |
aatttttatttaaacataagtgattgatatagatatagatacatactatgacaaaatttcaccccaaaaatggaaccatgagtggaagtaagcaaatgaa |
200 |
Q |
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| T |
34942966 |
aatttttatttaaacataagtgattgatatagatatagatacatactatgacaaaatttcaccccaaaaatggaaccatgagtggaagtaagcaaatgaa |
34943065 |
T |
|
| Q |
201 |
agttgttgtattgtatttgtgtgtaggaaattgatggaaggtacgagaaaaacattaagggcataggaagcaatgtaaatgggacactgattgaaagccc |
300 |
Q |
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| T |
34943066 |
agttgttgtattgtatttgtgtgtaggaaattgatggaaggtacgagaaaaacattaagggcataggaagcaatgtaaatgggacactgattgaaagccc |
34943165 |
T |
|
| Q |
301 |
tttgtgctccactcaattggttacaaaggctgagaggaactaatgtttgtgtcctttaaataacagacatatattgtcacct |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34943166 |
tttgtgctccactcaattggttacaaaggctgagaggaactaatgtt--tgtcctttaaataacagacatatattgtcacct |
34943245 |
T |
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