View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_17 (Length: 356)
Name: NF16701_low_17
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 8061110 - 8061450
Alignment:
| Q |
1 |
ctctttgagcaaattgaagagctattggaaaaagtagatgtcacacctgctgtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctca |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8061110 |
ctcttcgagcaaattgaagagctattggaaaaagtagatgtcacccctgcagtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctca |
8061209 |
T |
|
| Q |
101 |
aagcacttctcaaatttcttcaagaaattgacatttcaggagagaaaaactgactttagaaatgcattatgtcatttgcacttgctactattctatctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8061210 |
aagcacttctcaaatttcttcaagaaattgacatttcaggagagaaaaactgactttagaaatgcattatgtcatttgcacttgctactattctatctaa |
8061309 |
T |
|
| Q |
201 |
tattcatgactttcaactatctaaaataatacattggcagaattttgagataccactttgcctttatattttttgcgtgggtttcttatatttatatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8061310 |
tattcatgactttcaactatctaaaataatacattggcaggactttgagataccactttgcctttatattttttgcgtgggtttcttatatttatatttt |
8061409 |
T |
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| Q |
301 |
cattcacgctaagttttagtttcgattcacacctgccaatt |
341 |
Q |
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| T |
8061410 |
cattcacgctaagttttagtttcgattcacacctgccaatt |
8061450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 7931471 - 7931273
Alignment:
| Q |
1 |
ctctttgagcaaattgaagagctattggaaaaagtagatg----tcacacctgctgtagtggcagagcagctgttgagaagtgaggatgctgatgttgct |
96 |
Q |
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| T |
7931471 |
ctctttgagcaaattgaagagctattggaaaaagtagatgccatgcacacctgctgtagtggcagagcagctgttgagaagtgaggatgctgatgttgct |
7931372 |
T |
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| Q |
97 |
ctcaaagcacttctcaaatttcttcaagaaattgacatttcaggagagaaaaactgactttagaaatgcattatgtcatttgcacttgctactattcta |
195 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |
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| T |
7931371 |
ctcaaagcacttctcaaatttcttcaagaaattgatatttcaggagagaaaaactaatactagaaatgcattatgtcatttgcatctgctactattcta |
7931273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 8055969 - 8055832
Alignment:
| Q |
1 |
ctctttgagcaaattgaagagctattggaaaaagtagatgtcacacctgctgtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctca |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||| |||| |
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| T |
8055969 |
ctctttgagcaaattgaagagctattggaaaaagtagatgtcacccctgcagtagtggcagagcatctgttgagaagtgaggatcctgatgttgttctcg |
8055870 |
T |
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| Q |
101 |
aagcacttctcaaatttcttcaagaaattgacatttca |
138 |
Q |
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| T |
8055869 |
aagaacttataaaatttcttcaagaaattgacatttca |
8055832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 8058229 - 8058362
Alignment:
| Q |
4 |
tttgagcaaattgaagagctattggaaaaagtagatgtcacacctgctgtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctcaaag |
103 |
Q |
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||||| ||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||| || |
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| T |
8058229 |
tttgaacaaattgaaaagctattggaaaaaatagaggtcacccctgctgtagtggcagagcatctgttgagaagtgaggatcctgatgttgctcttggag |
8058328 |
T |
|
| Q |
104 |
cacttctcaaatttcttc-aagaaattgacattt |
136 |
Q |
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||||| | |||||||||| ||||||||||||||| |
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| T |
8058329 |
cacttattaaatttcttcaaagaaattgacattt |
8058362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 8053678 - 8053802
Alignment:
| Q |
1 |
ctctttgagcaaattgaagagctattggaaaaagtagatgtcacacctgctgtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctca |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||| || |||||| ||||||| |||||||||||| | || ||||||||||| ||| ||||||||||||| |
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| T |
8053678 |
ctctttgaacaaattgaagagctattggaaaaggttgatgtctcacctgcagtagtggcagagtatctattgagaagtgaagatcctgatgttgctcttg |
8053777 |
T |
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| Q |
101 |
aagcacttctcaaatttcttcaaga |
125 |
Q |
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||||||| | |||||||||||||| |
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| T |
8053778 |
gagcacttgttaaatttcttcaaga |
8053802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 47546594 - 47546400
Alignment:
| Q |
1 |
ctctttgagcaaattgaagagctattggaaaaagtagatgtcacacctgctgtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctca |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47546594 |
ctctttgaacaaattgaagagctattggaaaaagtagatgtcacacctgcagtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctca |
47546495 |
T |
|
| Q |
101 |
aagcacttctcaaatttcttcaagaaattgacatttcaggagagaaaaactgactttagaaatgcattatgtcatttgcacttgctactattcta |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |
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| T |
47546494 |
aagcacttctcaaatttcttcaagaaattgacatttcaggagagaaaaactaatactagaaatgcattatgtcatttgcatctgctactattcta |
47546400 |
T |
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