View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_18 (Length: 321)
Name: NF16701_low_18
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 108 - 307
Target Start/End: Complemental strand, 31273303 - 31273102
Alignment:
| Q |
108 |
tgaatagggaaataagaaagcttaatttaactgtagtnnnnnnnnnta--gatgcatcaagctgtgagattattgaaaaagaatagaagatttaacgagc |
205 |
Q |
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| T |
31273303 |
tgaatagggaaataagaaagcttaatttaactgtagtaaaaaaaaaaaaagatgcatcaagctgtgagattattgaaaaagaatagaagatttaacgagc |
31273204 |
T |
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| Q |
206 |
tnnnnnnnntaaaagatatgaacttacagaaattatggcattctctttgagctacaaaaatgcagtagtagagtgaagatgtagtaacaatgagtagcta |
305 |
Q |
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| T |
31273203 |
taaaaaaaataaaagatatgaacttacagaaattatggcattctcttttatctacaaaaatgcagtagtagagtgaagatgtagtaacaatgagtagcta |
31273104 |
T |
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| Q |
306 |
ct |
307 |
Q |
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|| |
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| T |
31273103 |
ct |
31273102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 31273434 - 31273325
Alignment:
| Q |
1 |
gatacatgcataaattttattttgtgcacaagcgccatataatgattaagctttattttaacaaatgaaataataattttaggatttacctagcttgtta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31273434 |
gatacatgcataaattttattttgtgcacaagcgccatataataattaagctttattttaacaaatgaaataataattttaggatttacctagcttgtta |
31273335 |
T |
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| Q |
101 |
cataacttga |
110 |
Q |
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|||||||||| |
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| T |
31273334 |
cataacttga |
31273325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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