View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_20 (Length: 319)
Name: NF16701_low_20
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 26 - 296
Target Start/End: Complemental strand, 5040519 - 5040248
Alignment:
| Q |
26 |
ctcacttaatctgggacggagggagtaccaaatagatcatttattaaatgaatataaaaaattattttttgttaataattgagacgagagaaagtatagt |
125 |
Q |
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| T |
5040519 |
ctcacttaatctgggacggagggagtgccaaatacatcatttattaaatgaatataaaaaattattttttatttataattgagaccagagaaagtatact |
5040420 |
T |
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| Q |
126 |
ggaaaactagattcttagatttttcgagttttggctaaagttttctcgttttatccctcactaacatcaatacttg-nnnnnnngtttgttgacaaacaa |
224 |
Q |
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| T |
5040419 |
ggaaaactagattcttagatttttcgagttttggctaaagttttcttgtttcatcccacactaacatcaatacttgttttttttgtttgttgacaaacag |
5040320 |
T |
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| Q |
225 |
caatatttgcttgttttacacaaattaaggaagagtgaataataatttaatcatattgttcttgttaaatat |
296 |
Q |
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| T |
5040319 |
caatatttgcttgttttacacaaattaaggaagagtgaataataatttaatcatattgttcttgttaaatat |
5040248 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 3094331 - 3094279
Alignment:
| Q |
52 |
accaaatagatcatttattaaatgaatataaaaaattattttttgttaataat |
104 |
Q |
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| T |
3094331 |
accatatacatcatttattgaatgaatataaaaaataaatttttgtttataat |
3094279 |
T |
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