View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16701_low_21 (Length: 312)

Name: NF16701_low_21
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16701_low_21
NF16701_low_21
[»] chr8 (4 HSPs)
chr8 (16-305)||(14839007-14839296)
chr8 (16-156)||(43227940-43228080)
chr8 (145-305)||(43228102-43228262)
chr8 (91-150)||(38853658-38853717)
[»] chr7 (1 HSPs)
chr7 (16-305)||(27962394-27962683)
[»] chr2 (5 HSPs)
chr2 (17-165)||(24455709-24455853)
chr2 (140-305)||(24455861-24456026)
chr2 (140-230)||(1615142-1615232)
chr2 (268-305)||(38251600-38251637)
chr2 (268-305)||(43157905-43157942)
[»] chr1 (6 HSPs)
chr1 (17-109)||(25433729-25433821)
chr1 (59-165)||(50862430-50862532)
chr1 (94-149)||(25433516-25433571)
chr1 (140-218)||(50862540-50862618)
chr1 (268-305)||(11475329-11475366)
chr1 (268-305)||(11503369-11503406)
[»] chr3 (4 HSPs)
chr3 (152-305)||(49234341-49234496)
chr3 (140-226)||(49233851-49233937)
chr3 (59-165)||(49233945-49234047)
chr3 (86-149)||(49234533-49234594)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 14839007 - 14839296
Alignment:
Q  16 acctatttttgttaaattatgcattagccttagttagcataactccaaaatatatgcttatagaatatttgtttctttattttcatattcagatgtttgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14839007 acctatttttgttaaattatgcattagccttagttagcataactccaaaatatatgcttatagaatatttgtttctttattttcatattcagatgtttgt 14839106  T
Q  116 gcttaactattcagagctggttcaaggtaattttcggcatagtttagagctggttttcagcatgtggactaatgtaatgcagcagcggtgttttggtact 215  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  14839107 gcttaactattcagagctggttcaaggtaattttcgacatagtttagagctggttttcagcatatggactaatgtaatgcagccgcggtgttttggtact 14839206  T
Q  216 gcacctgctacgtagcggannnnnnncctccctacgtactgatttatctctatgttccagctgcaacatatcggttttgttttcttctct 305  Q
    |||||||||||||||||||       ||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||    
T  14839207 gcacctgctacgtagcggagttttttcctccctacgttctgatttgtctctgtgttccagctgcaacatatcggttttattttcttctct 14839296  T

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Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 43227940 - 43228080
Alignment:
Q  16 acctatttttgttaaattatgcattagccttagttagcataactccaaaatatatgcttatagaatatttgtttctttattttcatattcagatgtttgt 115  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  43227940 acctatttttgttgaattatgcattagccttggttagcataactccaaaatatatgcttatggaatatgtgtttctttattttcatatccagatgtttgt 43228039  T
Q  116 gcttaactattcagagctggttcaaggtaattttcggcata 156  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  43228040 gcttaactattcagagttggttcaaggtaattttctgcata 43228080  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 305
Target Start/End: Original strand, 43228102 - 43228262
Alignment:
Q  145 attttcggcatagtttagagctggttttcagcatgtggactaatgtaatgcagcagcggtgttttggtactgcacctgctacgtagcggannnnnnncct 244  Q
    |||||| ||||| ||||||| ||| |||| ||||||||||||||||| ||||||||| ||||||| | |||||| || |||| | | ||        |||    
T  43228102 attttctgcataatttagagttggctttcggcatgtggactaatgtagtgcagcagcagtgtttttgcactgcagcttctacctggtggcgttttttcct 43228201  T
Q  245 ccctacgtactgatttatctctatgttccagctgcaacatatcggttttgttttcttctct 305  Q
    |||| ||| ||||||| ||||| ||||||||||||||||||||||||||  ||||||||||    
T  43228202 ccctgcgttctgatttgtctctgtgttccagctgcaacatatcggttttactttcttctct 43228262  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 38853717 - 38853658
Alignment:
Q  91 tttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttc 150  Q
    |||| ||| ||||||||||||||| |||||||||||| |||  |||||||||||||||||    
T  38853717 tttaattttatattcagatgtttgcgcttaactattcggagtgggttcaaggtaattttc 38853658  T

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Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 27962683 - 27962394
Alignment:
Q  16 acctatttttgttaaattatgcattagccttagttagcataactccaaaatatatgcttatagaatatttgtttctttattttcatattcagatgtttgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27962683 acctatttttgttaaattatgcattagccttagttagcataactccaaaatatatgcttatagaatatttgtttctttattttcatattcagatgtttgt 27962584  T
Q  116 gcttaactattcagagctggttcaaggtaattttcggcatagtttagagctggttttcagcatgtggactaatgtaatgcagcagcggtgttttggtact 215  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  27962583 gcttaactattcagagctggttcaaggtaattttcgacatagtttagagctggttttcagcatatggactaatgtaatgcagccgcggtgttttggtact 27962484  T
Q  216 gcacctgctacgtagcggannnnnnncctccctacgtactgatttatctctatgttccagctgcaacatatcggttttgttttcttctct 305  Q
    |||||||||||||||||||       ||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||    
T  27962483 gcacctgctacgtagcggagttttttcctccctacgttctgatttgtctctgtgttccagctgcaacatatcggttttattttcttctct 27962394  T

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Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 24455709 - 24455853
Alignment:
Q  17 cctatttttgttaaattatgcattagccttagttagcataactccaaaatatatgcttatagaatatttgtttctttattttcatattcagatgtttgtg 116  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||| ||||||  ||||    
T  24455709 cctatttttgttgaattatgcattagccttagttagcatagctccaaaatatatgcttat-gaa-atgtgtttctttattttcatatacagatg--tgtg 24455804  T
Q  117 cttaactattcagagctggttcaaggtaattttcggcatagtttagagc 165  Q
    |||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  24455805 cttaactattcagagctggttcaaggtaattttctgcataatttggagc 24455853  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 140 - 305
Target Start/End: Original strand, 24455861 - 24456026
Alignment:
Q  140 aggtaattttcggcatagtttagagctggttttcagcatgtggactaatgtaatgcagcagcggtgttttggtactgcacctgctacgtagcggannnnn 239  Q
    |||| |||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||| |||| ||||||||||| ||          
T  24455861 aggtgattttctgcataatttagagctggttttcggcatgtggactaatgtaatgcaacagcagtgttttggtattgcagctgctacgtagtggtatttt 24455960  T
Q  240 nncctccctacgtactgatttatctctatgttccagctgcaacatatcggttttgttttcttctct 305  Q
      |||||||| || ||||||| ||||| || |||||||||| |||||||||||| |||||||||||    
T  24455961 ttcctccctatgttctgatttttctctgtggtccagctgcaccatatcggttttattttcttctct 24456026  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 1615232 - 1615142
Alignment:
Q  140 aggtaattttcggcatagtttagagctggttttcagcatgtggactaatgtaatgcagcagcggtgttttggtactgcacctgctacgtag 230  Q
    |||| |||||| ||||| ||||||||||||||||  |||||||||||||||| ||||||||| ||||||||||| |||| |||||| ||||    
T  1615232 aggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtag 1615142  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 38251637 - 38251600
Alignment:
Q  268 tgttccagctgcaacatatcggttttgttttcttctct 305  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  38251637 tgttccagctgcaacatattggttttgttttcttctct 38251600  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 43157905 - 43157942
Alignment:
Q  268 tgttccagctgcaacatatcggttttgttttcttctct 305  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  43157905 tgttccagctgcaacatattggttttgttttcttctct 43157942  T

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Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 25433729 - 25433821
Alignment:
Q  17 cctatttttgttaaattatgcattagccttagttagcataactccaaaatatatgcttatagaatatttgtttctttattttcatattcagat 109  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25433729 cctatttttgttaaattatgcattagccttagttaacataactccaaaatatatgcttatagaatatttgtttctttattttcatattcagat 25433821  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 50862430 - 50862532
Alignment:
Q  59 tccaaaatatatgcttatagaatatttgtttctttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttcggcatagt 158  Q
    |||||||||||||||||| |||| |||  ||||| |||||||||| || ||||  ||||||| ||||||||||||||||||||||| ||||| ||||| |    
T  50862430 tccaaaatatatgcttatggaatgttt--ttcttcattttcatatccaaatgt--gtgcttatctattcagagctggttcaaggtagttttctgcataat 50862525  T
Q  159 ttagagc 165  Q
    || ||||    
T  50862526 ttggagc 50862532  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 25433516 - 25433571
Alignment:
Q  94 attttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaatttt 149  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  25433516 attttcatattcagatgtttgcgcttaactattcggagttggttcaaggtaatttt 25433571  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 50862540 - 50862618
Alignment:
Q  140 aggtaattttcggcatagtttagagctggttttcagcatgtggactaatgtaatgcagcagcggtgttttggtactgca 218  Q
    |||| |||||| ||||| |||||||||| ||||| ||||||||||||||||| || | ||||  || ||||||||||||    
T  50862540 aggtgattttctgcataatttagagctgattttcggcatgtggactaatgtagtgtatcagcactgctttggtactgca 50862618  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 11475329 - 11475366
Alignment:
Q  268 tgttccagctgcaacatatcggttttgttttcttctct 305  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  11475329 tgttccagctgcaacatattggttttgttttcttctct 11475366  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 11503369 - 11503406
Alignment:
Q  268 tgttccagctgcaacatatcggttttgttttcttctct 305  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  11503369 tgttccagctgcaacatattggttttgttttcttctct 11503406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 152 - 305
Target Start/End: Complemental strand, 49234496 - 49234341
Alignment:
Q  152 gcatagtttagagctggttttcagcatgtggactaatgtaatgcagcagcggtgttttggtactgcacctgctacgtagcggannnnnnncctccctacg 251  Q
    ||||| |||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||| ||| ||        |||||||  |    
T  49234496 gcataatttagagctggttttctgcatgtgggctaatgtaatgcagcagcagtgttttggtactgcagctgctacatagtggcattttttcctccctgtg 49234397  T
Q  252 tactgatttatc--tctatgttccagctgcaacatatcggttttgttttcttctct 305  Q
    | ||||||| ||  | | ||||||||||||||||||| ||||||  ||||||||||    
T  49234396 ttctgatttgtctatttgtgttccagctgcaacatattggttttaatttcttctct 49234341  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 49233937 - 49233851
Alignment:
Q  140 aggtaattttcggcatagtttagagctggttttcagcatgtggactaatgtaatgcagcagcggtgttttggtactgcacctgctac 226  Q
    |||| |||||| ||||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| || |||||||    
T  49233937 aggtgattttctgcataatttagagctggttttcggcatgtggactaatgtagtgcagcagcagtgttttggtactacagctgctac 49233851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 49234047 - 49233945
Alignment:
Q  59 tccaaaatatatgcttatagaatatttgtttctttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttcggcatagt 158  Q
    |||||||||||||||||| |||| | |  |||||| ||||||||| || ||||  ||||||||||||||||||||||||||||||||||||| ||||| |    
T  49234047 tccaaaatatatgcttatggaatgtct--ttcttttttttcatatccatatgt--gtgcttaactattcagagctggttcaaggtaattttctgcataat 49233952  T
Q  159 ttagagc 165  Q
    || ||||    
T  49233951 ttggagc 49233945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 49234594 - 49234533
Alignment:
Q  86 gtttctttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaatttt 149  Q
    |||||||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||||    
T  49234594 gtttctttattttcatatccagatgt--gtgcttaattattcagagctggttcaaggtaatttt 49234533  T

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