View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_23 (Length: 291)
Name: NF16701_low_23
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 53258430 - 53258172
Alignment:
| Q |
14 |
taatatacatcccattgttataacatcaacaaatttccataaaataactgaatgtaacaagttatcagatcttaaaaaaggaattatctttgcatttgga |
113 |
Q |
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| T |
53258430 |
taatatacatcccattgttataacatcaacaaatttccataaaataactgaatgtaacaagttatcagatcttaaaaaaggaattatctttgcatttgga |
53258331 |
T |
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| Q |
114 |
aaatgaaagaggattacgaatcaatttcaagcaatattaaacttagagaaagtgaaatatacatagagaaagtcaaaaccttacctttagtagtgatata |
213 |
Q |
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| T |
53258330 |
aaatgaaagaggattacgaatcaatttcaagcaatattaaacttagaga--------------------aagtcaaaaccttacctttagtagtgatata |
53258251 |
T |
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| Q |
214 |
atcaaatgattcaagagcttctgaaacagttcgatatatgtttggcgacaaaacatgcaccaagt-attatctacccac |
291 |
Q |
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| T |
53258250 |
atcaaatgattcaagagcttctgaaacagttcgatatatgtttggcgacaaaacatgcaccaagtgattatctacccac |
53258172 |
T |
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