View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_24 (Length: 291)
Name: NF16701_low_24
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 37629912 - 37629668
Alignment:
| Q |
14 |
attattctcctctatcaatgttggtgctgggtagataacagcatcactaccagggttgtagaatgaggctatagacattcttgttccatcagtttgtgct |
113 |
Q |
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| T |
37629912 |
attattctcctctatcaatgttggtgctgggtagataacagcatcactaccagggttgtagaatgaggctatagacattcttgttccatcagtttgtgct |
37629813 |
T |
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| Q |
114 |
accacacggtgttccacacttttgtacttaccatttgttattacctgtcacatt-----nnnnnnnnnnnnnnttaatgcttgatatgaatcatttgttg |
208 |
Q |
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| T |
37629812 |
accacacggtgttccacacttttgtacttgccatttgttattacctgtcacattaaaaataaaaaataaaaaattaatgcttgatatgaatcatttgttg |
37629713 |
T |
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| Q |
209 |
ttgattttatatgtttgtaaaaatgttaatataaatttagaagaatg |
255 |
Q |
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| T |
37629712 |
ttgattt--tatgtttgtaaaaatgtcaatataaatttagaagaatg |
37629668 |
T |
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Back To:
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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 36871184 - 36871303
Alignment:
| Q |
42 |
gggtagataacagcatcactaccagggttgtagaatgaggctatagacattcttgttccatcagtttgtgctaccacacggtgttccacacttttgtact |
141 |
Q |
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| T |
36871184 |
gggtaaatgacagcatcactcccagggttgtagaatgatgctatggacattcttgttccatttgtttgtgctatcacacggtgttccacactcttgtact |
36871283 |
T |
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| Q |
142 |
taccatttgttattacctgt |
161 |
Q |
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| T |
36871284 |
tgccatttgttattacctgt |
36871303 |
T |
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