View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_3 (Length: 512)
Name: NF16701_low_3
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Complemental strand, 37844643 - 37844169
Alignment:
| Q |
18 |
gtaattgttttccgagactggttaataatttggtagacgaaggaactgagtttgaagaatcataaaacttttggatagcaaatgcaacatataattagca |
117 |
Q |
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| T |
37844643 |
gtaattgttttccgagactggttaataatttggtagacgaaggaactgagtttgaagaatcataaaacttttggatagcaaatgcaacatataattagca |
37844544 |
T |
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| Q |
118 |
atatggtagactactaatagttttcttctttgatacatcaaacttatacaatatgttatagcctttgatgctaatgagacaagatagcaaagtaaagatg |
217 |
Q |
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| T |
37844543 |
atatggtagactac--atagttttcttctttgatacatcaaacttatacaatatgttatagcctttgatgctaatgagacaagatagcaaagtgaagatg |
37844446 |
T |
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| Q |
218 |
catgactatatgaaaagtaagatacatgaattaggtccaaggtatagtacaatcaaaagccgatgattatttggtatacacttgctatttaaaatgttag |
317 |
Q |
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| T |
37844445 |
catgactatatgaaaagtaagatacatgaattaggtccaaggtatagtacaatcaaaagccgatgattatttggtatacacttgctatttaaaatgttag |
37844346 |
T |
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| Q |
318 |
tatacattatctagcagactagtatggattcttcaatttgaaatcgtgttcaagggctcgataggtgttgatgtctaacatcgacagaactttgatatat |
417 |
Q |
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| T |
37844345 |
tatacattatctagcagactagtatggattcttcaatttgaaatcgtgttcaagggctcgataggtgttgatgtctaacatcgacagaacttcgatacat |
37844246 |
T |
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| Q |
418 |
gtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtcggtattggtgcatgtatattgt |
494 |
Q |
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| T |
37844245 |
gtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtcggtatcggtgcatgtatattgt |
37844169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 476
Target Start/End: Complemental strand, 16331029 - 16330969
Alignment:
| Q |
416 |
atgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtcggta |
476 |
Q |
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| T |
16331029 |
atgtggttacatttaatcattttcattttcttaaattattactagtgtctacatgtcggta |
16330969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 16567342 - 16567286
Alignment:
| Q |
416 |
atgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtc |
472 |
Q |
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| T |
16567342 |
atgtggttacattcaatcatttccattttcttaaattattgcatgtgtctacatgtc |
16567286 |
T |
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