View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_30 (Length: 260)
Name: NF16701_low_30
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 2613222 - 2613453
Alignment:
| Q |
19 |
aagagttgatgtaaatatgatttgattactaaaataaaattaatcaaccaca--taaacttgcataagattggcagcatctcaattgataagttttgtaa |
116 |
Q |
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| T |
2613222 |
aagagttgatgtaaatatgatttgattactaaaataaaattaatcaaccacagataaacttgcataagattggcagcatctcaattgataagttttgtaa |
2613321 |
T |
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| Q |
117 |
aaccgaaagagtattatt-aatcaagaggttcaggtttaaactttatggactaacgtaacccaattgtctacctaacaaaaaattaaacttgctttccat |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2613322 |
aaccgaaagagtattatttaatcaagaggttcaggtttaaactttatggactaacgtaacccaattgtctacctaacaaaaaattaaacttgctttccat |
2613421 |
T |
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| Q |
216 |
catttctaacctaacttactttccttcatttc |
247 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2613422 |
catttctaacctaacttactttccttcatttc |
2613453 |
T |
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