View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_32 (Length: 256)
Name: NF16701_low_32
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 354086 - 354323
Alignment:
| Q |
1 |
tctgatctgttgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactataaagtagagaattagctttattctttccctctattactcc |
100 |
Q |
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| T |
354086 |
tctgatctattgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactcc |
354185 |
T |
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| Q |
101 |
ataattgtgatcattgctggagcagtgttatggattcctcaacgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttga |
200 |
Q |
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| T |
354186 |
ataattgtgatcattgctggagcagtgttatggattcttcaatgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttga |
354285 |
T |
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| Q |
201 |
gtcattgtgtgtgtttgtaatgtctggtcaaggaaagg |
238 |
Q |
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| T |
354286 |
gtcattgtgtgtgtttgtaatgtctggtcaaggaaagg |
354323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 10580612 - 10580662
Alignment:
| Q |
105 |
ttgtgatcattgctggagcagtgttatggattcctcaacgcataacaaatg |
155 |
Q |
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|||| ||||||| ||||||||||| |||||||| ||||||||||||||||| |
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| T |
10580612 |
ttgttatcattgttggagcagtgtcatggattcttcaacgcataacaaatg |
10580662 |
T |
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