View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_34 (Length: 251)
Name: NF16701_low_34
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 48692997 - 48693240
Alignment:
| Q |
1 |
aatattactataggcccgtgggttcactttgaaatgcgaggggaacagcaatggctttctctgtatttaaaaacttcattctttccacaaacatccattt |
100 |
Q |
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| T |
48692997 |
aatattactataggtccgtgggttcactttgaaatgcgaggggaacagcaatggctttctctgtatttaaaaaattcattctttccacaaacatccattt |
48693096 |
T |
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| Q |
101 |
tctctttccacaattccatgattggttgaacatgtttttctttttgggaaagaaacagaaagtgcaacaaacatcatcggatataaataatttggcttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48693097 |
tctctttccacaattccatgattggttgaacatgtttttctttttgggaaagaaacagaaagtgcaacaaacatcatcggatataaataatttggcttgt |
48693196 |
T |
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| Q |
201 |
ttgtattattgtttattcaacaacacctgaggtttttcatttca |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48693197 |
ttgtattattgtttattcaacaacacctgaggtttttcatttca |
48693240 |
T |
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