View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_35 (Length: 250)
Name: NF16701_low_35
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 44824155 - 44823917
Alignment:
| Q |
1 |
attcctcatcaatcagacaacagtattatatcgggatcttaaagaaaaacaatattaacaaatacaaacatataccttccataaaaagggatcttagctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44824155 |
attcctcatcaatcagacaacagtattatatcgggatcttaaagaaaaacaatattaacaaatacaaacatataccttccataaaaagggatcttagctt |
44824056 |
T |
|
| Q |
101 |
tagtagcattttgcttcaattgatcaaatgcaccagctctaaatgtatctgcacacactaaagctggcttccatcctttcttctgataataatgcgcata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44824055 |
tagtagcattttgcttcaattgatcaaatgcaccagctctaaatgtatctgcacacactaaagctggcttccatcctttcttctgataacaatgcgcata |
44823956 |
T |
|
| Q |
201 |
ttttgtacatgttgtagtttttccagaacctgaattcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
44823955 |
ttttgtacatgttgtagtttttccagaacctgaattcat |
44823917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 227
Target Start/End: Original strand, 2204791 - 2204945
Alignment:
| Q |
73 |
taccttccataaaaagggatcttagctttagtagcattttgcttcaattgatcaaatgcaccagctctaaatgtatctgcacacactaaagctggcttcc |
172 |
Q |
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||||||||||| ||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |||||||||||||| |||| ||||||||||| |
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| T |
2204791 |
taccttccatagaaagggatcttagctttggttgcattttgcttcaactgatcaaacgcaccagctctgaatgtatctgcacatactagagctggcttcc |
2204890 |
T |
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| Q |
173 |
atcctttcttctgataataatgcgcatattttgtacatgttgtagtttttccaga |
227 |
Q |
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| T |
2204891 |
agcctttcttttgatgataaaatgcatattttgtacaagtagtggttttcccaga |
2204945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 33168591 - 33168733
Alignment:
| Q |
73 |
taccttccataaaaagggatcttagctttagtagcattttgcttcaattgatcaaatgcaccagctctaaatgtatctgcacacactaaagctggcttcc |
172 |
Q |
| |
|
|||||||||| ||||||||| |||| ||| || | |||||||||||||||||||||||||||| ||||||||||||||||||| |||| || ||| |
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| T |
33168591 |
taccttccattaaaagggatgttagttttggttgaattttgcttcaattgatcaaatgcaccatctctaaatgtatctgcacaaactactccttccttta |
33168690 |
T |
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| Q |
173 |
atcctttcttctgataataatgcgcatattttgtacatgttgt |
215 |
Q |
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| T |
33168691 |
atccttttttctgataataattggcatattgtgtacatgttgt |
33168733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 33116810 - 33116973
Alignment:
| Q |
73 |
taccttccataaaaagggatcttagctttagtagcattttgcttcaattgatcaaatgcaccagctctaaatgtatctgcacacactaaagctggcttcc |
172 |
Q |
| |
|
|||||||||||| ||||||| |||| || || | | | |||||||||||||||||||||||| ||||| |||||||| |||||||||| ||| ||| |
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| T |
33116810 |
taccttccataacaagggatgttagtttcagcataaatctgcttcaattgatcaaatgcaccatttctaagtgtatctgtacacactaaacctgtcttta |
33116909 |
T |
|
| Q |
173 |
atcctttcttctgataataatgcgcatattttgtacatgttgtagtttttccagaacctgaatt |
236 |
Q |
| |
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|||||||||||||||||| || ||| ||| || ||| ||||| ||||||||| |||||||||| |
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| T |
33116910 |
atcctttcttctgataatgatttgcaaattgtgcacacgttgttgtttttccacaacctgaatt |
33116973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 33159289 - 33159396
Alignment:
| Q |
108 |
attttgcttcaattgatcaaatgcaccagctctaaatgtatctgcacacactaaagctggcttccatcctttcttctgataataatgcgcatattttgta |
207 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| ||||||||| |||| ||| ||| ||||||| ||||||||||||| |||||| |||| |
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| T |
33159289 |
attttgcttcaattgatcaaatgcaccatctctaaatgcatctgcacaaactactcctgcctttaatccttttttctgataataattgccatattgtgta |
33159388 |
T |
|
| Q |
208 |
catgttgt |
215 |
Q |
| |
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|||||||| |
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| T |
33159389 |
catgttgt |
33159396 |
T |
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