View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_40 (Length: 230)
Name: NF16701_low_40
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2441438 - 2441667
Alignment:
| Q |
1 |
tgagtattctccgtataatattcatggagatcatcctaggttatgtgtagattgcttcgttggctcctgcaatggcatactttgttttactgctggtatt |
100 |
Q |
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| T |
2441438 |
tgagtattctccgtataatattcatggagatcatcctaggttatgtgtagattgcttcgttggctcctgcaatggcatactttgttttactgctggtatt |
2441537 |
T |
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| Q |
101 |
tataaaaagtctgtcatattatggaacccttccattagaaaaattaaggagtttcccctatttcaaaagccaaattggagtttcactcacatggcatttg |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2441538 |
tataaaatctctgtcatattatggaacccttccattagaaaaattaaggagtttcccctatttcaaaagccaaattggagtttcactcacatggcgtttg |
2441637 |
T |
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| Q |
201 |
gctttggctatgattcttttaatgataatt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2441638 |
gctttggctatgattcttttaatgataatt |
2441667 |
T |
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