View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_41 (Length: 227)
Name: NF16701_low_41
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 24613629 - 24613523
Alignment:
| Q |
1 |
gtagtactactaggctctaattttatttttgaggctaatactttggggaggtccagttccattgagcactttacacaccctaaggtccggccatgggacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24613629 |
gtagtactactaggctctaattttatttttgaggctaatactttggagagttccagttccattgagcactttacacatcctaaggtccggccatgggacc |
24613530 |
T |
|
| Q |
101 |
aagttca |
107 |
Q |
| |
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||||||| |
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| T |
24613529 |
aagttca |
24613523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 24613477 - 24613409
Alignment:
| Q |
141 |
tatgatttagcgtatatttgagcattaccaagcttaacctgaagctcactcgcttagtaccctaggaca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24613477 |
tatgatttagcgtatatttgagcattaccaagcttaacctgaagctcactcgcttagtaccttaggaca |
24613409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 24653096 - 24653038
Alignment:
| Q |
141 |
tatgatttagcgtatatttgagcattaccaagcttaacctgaagctcactcgcttagta |
199 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24653096 |
tatgattcaacgtatatttgagcattaccaagcttaacctgaagctcactcgcttagta |
24653038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 24620981 - 24620914
Alignment:
| Q |
141 |
tatgatttagcgtatatttgagcattaccaagcttaacctgaagctcactcgcttagtaccctaggac |
208 |
Q |
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| T |
24620981 |
tatgattaagcgtatatttgagcaataccaagcttaacctaaagcttactcgcttagtaccttaggac |
24620914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 22315791 - 22315863
Alignment:
| Q |
13 |
ggctctaattttatttttgaggctaatactttggggaggtccagttccattgagcactttacacaccctaagg |
85 |
Q |
| |
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|||| ||||||| ||| ||||||| |||| |||||||||||||| |||||||||| ||| ||| |||||||| |
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| T |
22315791 |
ggctataattttttttatgaggctcataccttggggaggtccagctccattgagctgtttgcaccccctaagg |
22315863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 15734893 - 15734831
Alignment:
| Q |
1 |
gtagtactactaggctctaattttatttttgaggctaatactttggggaggtccagttccatt |
63 |
Q |
| |
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||||||||||| || | ||||||| |||||||||| |||| |||||||||||| |||||||| |
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| T |
15734893 |
gtagtactacttggttataattttttttttgaggcccataccttggggaggtccggttccatt |
15734831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 39135034 - 39135125
Alignment:
| Q |
1 |
gtagtactactaggctctaattttatttttgaggctaatactttggggaggtccagttccattgagcactttacacaccctaaggtccggcc |
92 |
Q |
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|
||||||||||| |||| ||||||| |||||||||| |||| ||||||||| ||||||||||||||| |||| ||||||| ||||| ||||| |
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| T |
39135034 |
gtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggcc |
39135125 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 11952936 - 11953009
Alignment:
| Q |
19 |
aattttatttttgaggctaatactttggggaggtccagttccattgagcactttacacaccctaaggtccggcc |
92 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| ||||||||||||||| | || ||||||| ||||| ||||| |
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| T |
11952936 |
aattttatttttgaggctcataccttggggaggcccagttccattgagctccttgcacaccccaaggttcggcc |
11953009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 21666042 - 21666102
Alignment:
| Q |
38 |
atactttggggaggtccagttccattgagcactttacacaccctaaggtccggccatggga |
98 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| | || ||||||| ||||||||||| ||||| |
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| T |
21666042 |
ataccttggggaggcccagttccattgagctccttgcacaccccaaggtccggccttggga |
21666102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 37182467 - 37182379
Alignment:
| Q |
1 |
gtagtactactaggctctaattttatttttgaggctaatactttggggaggtccagttccattgagcactttacacaccctaaggtccg |
89 |
Q |
| |
|
||||||| ||| ||| |||||| ||||||| ||| ||| |||||||||||||| |||||||||| |||| ||||||| |||||||| |
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| T |
37182467 |
gtagtaccactgagctataatttcctttttgacgctcttaccttggggaggtccagctccattgagctctttgcacaccccaaggtccg |
37182379 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 4036878 - 4036792
Alignment:
| Q |
1 |
gtagtactactaggctctaattttatttttgaggctaatactttggggaggtccagttccattgagcactttacacaccctaaggtccg |
89 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||| |||| ||||||||| ||| |||||||||| ||| ||||||| |||||||| |
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| T |
4036878 |
gtagtactactgggctataatttt--ttttgaggctcatacattggggaggcccaactccattgagcgttttgcacaccccaaggtccg |
4036792 |
T |
|
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 38009474 - 38009545
Alignment:
| Q |
21 |
ttttatttttgaggctaatactttggggaggtccagttccattgagcactttacacaccctaaggtccggcc |
92 |
Q |
| |
|
|||| ||||| ||| | |||| ||||||||| ||| |||||||||| |||||||||||| ||||||||||| |
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| T |
38009474 |
tttttttttttaggttcataccttggggaggctcagctccattgagctctttacacaccccaaggtccggcc |
38009545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 10543479 - 10543392
Alignment:
| Q |
1 |
gtagtactactaggctctaattttatttttgaggctaatactttggggaggtccagttccattgagcactttacacaccctaaggtccg |
89 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| ||| |||| ||| ||||| || ||| ||||||| | || |||||||||| ||||| |
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| T |
10543479 |
gtagtactactaggctataattt-atttttgaagctcataccttgaggaggcccgattctattgagctccttgcacaccctaaagtccg |
10543392 |
T |
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