View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_44 (Length: 209)
Name: NF16701_low_44
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 29020123 - 29020324
Alignment:
| Q |
1 |
tcctcgtacaacaataagtattatgccagtttcaaataaaaaagtatcaaaccacatagaccacgcttagtttcaatcattcttaaattcactgaaattc |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29020123 |
tcctcgtacaacaataagtattatgccggtttcaaataaaaaagtatcaaaccacatagaccacgcttagtttcaatcattcttaaattcactgaaattc |
29020222 |
T |
|
| Q |
101 |
taaattaaggtttgtaaaattgttttggtagcaggattgcaagcaagttaagacaagttagagaaagttgtgttgggattagacttagataatttcacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29020223 |
taaattaaggtttgtaaaattgttttggtagcaggattgcaagcaagttaagacaagttagagaaagttgtgttgggattagacttagataatttcacat |
29020322 |
T |
|
| Q |
201 |
cc |
202 |
Q |
| |
|
|| |
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|
| T |
29020323 |
cc |
29020324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 192
Target Start/End: Complemental strand, 9890040 - 9889915
Alignment:
| Q |
67 |
ttagtttcaatcattcttaaattcactgaaattctaaattaaggtttgtaaaattgttttggtagcaggattgcaagcaagttaagacaagttagagaaa |
166 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||| ||||||||| | ||||||||| ||| | |||| || || || || ||| ||||| |
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|
| T |
9890040 |
ttagttttgatcattcttaaattcactgaaattctatattacattttgtaaaagtattttggtagtaggttcgcaactaaaatacgataatttaaagaaa |
9889941 |
T |
|
| Q |
167 |
gttgtgttgggattagacttagataa |
192 |
Q |
| |
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||| | ||| |||||||||| ||||| |
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|
| T |
9889940 |
gttatattgagattagacttggataa |
9889915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 32268649 - 32268507
Alignment:
| Q |
52 |
ccacatagaccacgcttagtttcaatcattcttaaattcactgaaattctaaattaaggtttgtaaaattgttttggtagcaggattgcaagcaagttaa |
151 |
Q |
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||||| ||||| ||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |
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| T |
32268649 |
ccacaaagaccgcgcttagtttcgatcgttcttaaattcacaggaattctaaattaaggtttgtaaaattggtttggtggcaggattgcaattaagttaa |
32268550 |
T |
|
| Q |
152 |
gacaagttagagaaagttgtgt--tgggattagacttagataa |
192 |
Q |
| |
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||||||||| | |||||||| | |||||||||| |||||||| |
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| T |
32268549 |
gacaagttatataaagttgtatactgggattagaattagataa |
32268507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 58 - 202
Target Start/End: Complemental strand, 34456004 - 34455859
Alignment:
| Q |
58 |
agaccacgcttagtttcaatcattcttaaattcactgaaattctaaattaaggtttgtaaaattgttttggtagcaggattgc-aagcaagttaagacaa |
156 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| || |||| | ||| ||||| |||||| |
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|
| T |
34456004 |
agaccacacttagtttcgtacattcttaaattcacagaaattctaaattaaggtttgtaaaattggtttagtatcaagatttcaaagtaagttcagacaa |
34455905 |
T |
|
| Q |
157 |
gttagagaaagttgtgttgggattagacttagataatttcacatcc |
202 |
Q |
| |
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|||||||||||||||||||| || | ||||| |||| ||| ||||| |
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|
| T |
34455904 |
gttagagaaagttgtgttggcatcaaacttaaataacttctcatcc |
34455859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 13002087 - 13002244
Alignment:
| Q |
44 |
gtatcaaaccacatagaccacgcttagtttcaatcattcttaaattcactgaaattctaaattaaggtttgtaaaattgttttggtagcaggattgcaag |
143 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| | |||||||| | |||||||||||| || ||||||||| ||||||||||| ||||| |||| |
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| T |
13002087 |
gtatcgaaccacatagattgtgcttagtttcaatcgtacttaaatttaaagaaattctaaatcaaa-tttgtaaaaatgttttggtagtaggatcacaag |
13002185 |
T |
|
| Q |
144 |
caagttaagacaagttagagaaagttgtgttgggattagacttagataatttcacatcc |
202 |
Q |
| |
|
|| || || ||||| |||||||||||||||| ||||||||||||||| ||| ||||| |
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|
| T |
13002186 |
taaaatatgataagtttgagaaagttgtgttggaattagacttagataacttctcatcc |
13002244 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 65 - 201
Target Start/End: Original strand, 13076766 - 13076901
Alignment:
| Q |
65 |
gcttagtttcaatcattcttaaattcactgaaattctaaattaaggtttgtaaaattgttttggtagcaggattgcaagcaagttaagacaagttagaga |
164 |
Q |
| |
|
|||||||||||||| | |||||||| | |||||||||||| || ||||||||| ||||||||||| ||||| |||| || || || ||||| |||| |
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| T |
13076766 |
gcttagtttcaatcgtacttaaatttaaagaaattctaaatcaaa-tttgtaaaaatgttttggtagtaggatcacaagtaaaatatgataagtttgaga |
13076864 |
T |
|
| Q |
165 |
aagttgtgttgggattagacttagataatttcacatc |
201 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||| |
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| T |
13076865 |
aagttgtgttggaattagacttagataacttctcatc |
13076901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 16550718 - 16550820
Alignment:
| Q |
80 |
ttcttaaattcactgaaattctaaattaaggtttgtaaaa-ttgttttggtagcaggattgcaagcaagttaagacaag-ttagagaaagttgtgttggg |
177 |
Q |
| |
|
|||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||||| ||||| || || |||||| |||||||||||||||||||| |
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|
| T |
16550718 |
ttctaaaattcaaagaaattctaaattaa-gtttgtaaaagttgttttggtagcaggatcgcaagtaaaatatgacaagtttagagaaagttgtgttggg |
16550816 |
T |
|
| Q |
178 |
atta |
181 |
Q |
| |
|
|||| |
|
|
| T |
16550817 |
atta |
16550820 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 24808356 - 24808417
Alignment:
| Q |
44 |
gtatcaaaccacatagaccacgcttagtttcaatcattcttaaattcactgaaattctaaat |
105 |
Q |
| |
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||||||||||||| ||||||| ||||||| | ||||||||||||| | |||||||||||| |
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|
| T |
24808356 |
gtatcaaaccacagagaccacatttagtttagaccattcttaaattcgcagaaattctaaat |
24808417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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