View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16701_low_5 (Length: 492)

Name: NF16701_low_5
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16701_low_5
NF16701_low_5
[»] chr5 (3 HSPs)
chr5 (1-468)||(6582704-6583181)
chr5 (210-246)||(29115304-29115340)
chr5 (210-246)||(32172596-32172632)
[»] chr7 (2 HSPs)
chr7 (211-246)||(3610832-3610867)
chr7 (206-246)||(43152989-43153029)
[»] chr8 (1 HSPs)
chr8 (206-246)||(26215439-26215479)
[»] chr4 (1 HSPs)
chr4 (210-246)||(47970261-47970297)
[»] chr3 (2 HSPs)
chr3 (206-246)||(2128338-2128378)
chr3 (99-143)||(20170910-20170954)
[»] chr2 (2 HSPs)
chr2 (210-246)||(15119932-15119968)
chr2 (206-246)||(43199357-43199397)
[»] chr1 (3 HSPs)
chr1 (206-246)||(4256129-4256169)
chr1 (206-246)||(33339507-33339547)
chr1 (99-143)||(38578585-38578629)


Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 6582704 - 6583181
Alignment:
Q  1 atcaattcaaaagggaaagtatgacattgttcgaagaagatcaaggactatttggattgtcttatttaaacttacctagtgatataagaacttacgatac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6582704 atcaattcaaaagggaaagtatgacattgttcgaagaagatcaaggactatttggattgtcttatttaaacttacctagtgatataagaacttacaatac 6582803  T
Q  101 tgtttggaaaagcttataaaaacaacttataacatattcataaatcttttcaacttaatctcataagctctgca----------tgaaaacagtttataa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||    
T  6582804 tgtttggaaaagcttataaaaacaacttataacatattcataaatcttttcaacttaatctcataagctctgcaggaaaacttatgaaaacagtttataa 6582903  T
Q  191 cttataagnnnnnnntttaacttcattttagcttttgttgtagaaatagcttataccaaacagcgcttaactaagctgaatttccaggagagttggctat 290  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6582904 cttataagaaaaaaatttaacttcattttagcttttgttgtagaaatagcttataccaaacagcgcttaactaagctgaatttcaaggagagttggctat 6583003  T
Q  291 atgataatgcaggaactaaacaaaacttaccgacgatgtaagttccgacggcgacggcaatgagagcctgatgagaatggaagcaagcagcatgaggttg 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6583004 atgataatgcaggaactaaacaaaacttaccgacgatgtaagttccgatggcgacggcaatgagagcctgatgagaatggaagcaagcagcatgaggttg 6583103  T
Q  391 aaacggaacaacaccgtgacctacgtgacgaagatcaagatgctgtaatgttgtccactccatcgtgaatgaatccga 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6583104 aaacggaacaacaccgtgacctacgtgacgaagatcaagatgctgtaatgttgtccactccatcgtgaatgaatccga 6583181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 29115304 - 29115340
Alignment:
Q  210 acttcattttagcttttgttgtagaaatagcttatac 246  Q
    |||| |||||| |||||||||||||||||||||||||    
T  29115304 actttattttaccttttgttgtagaaatagcttatac 29115340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 32172632 - 32172596
Alignment:
Q  210 acttcattttagcttttgttgtagaaatagcttatac 246  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  32172632 acttcattttatcttttgttgtagaaatagtttatac 32172596  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 3610832 - 3610867
Alignment:
Q  211 cttcattttagcttttgttgtagaaatagcttatac 246  Q
    |||||||||| |||||||||||||||||||||||||    
T  3610832 cttcattttatcttttgttgtagaaatagcttatac 3610867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 43152989 - 43153029
Alignment:
Q  206 tttaacttcattttagcttttgttgtagaaatagcttatac 246  Q
    |||||||| |||||| |||||||| ||||||||||||||||    
T  43152989 tttaactttattttatcttttgttatagaaatagcttatac 43153029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 26215479 - 26215439
Alignment:
Q  206 tttaacttcattttagcttttgttgtagaaatagcttatac 246  Q
    |||||||| |||||| |||||||| ||||||||||||||||    
T  26215479 tttaactttattttatcttttgttatagaaatagcttatac 26215439  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 47970297 - 47970261
Alignment:
Q  210 acttcattttagcttttgttgtagaaatagcttatac 246  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  47970297 acttcattttatcttttgttatagaaatagcttatac 47970261  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 2128338 - 2128378
Alignment:
Q  206 tttaacttcattttagcttttgttgtagaaatagcttatac 246  Q
    |||||||| |||||| |||||||| ||||||||||||||||    
T  2128338 tttaactttattttatcttttgttatagaaatagcttatac 2128378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 20170954 - 20170910
Alignment:
Q  99 actgtttggaaaagcttataaaaacaacttataacatattcataa 143  Q
    |||||||| || |||||||||||||||||||| |||||| |||||    
T  20170954 actgtttgtaagagcttataaaaacaacttatgacatatccataa 20170910  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 15119968 - 15119932
Alignment:
Q  210 acttcattttagcttttgttgtagaaatagcttatac 246  Q
    |||||||||||||||||||| |||||| |||||||||    
T  15119968 acttcattttagcttttgttatagaaaaagcttatac 15119932  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 43199397 - 43199357
Alignment:
Q  206 tttaacttcattttagcttttgttgtagaaatagcttatac 246  Q
    |||||||| |||||| ||||||||||||||||| |||||||    
T  43199397 tttaactttattttatcttttgttgtagaaataacttatac 43199357  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 4256129 - 4256169
Alignment:
Q  206 tttaacttcattttagcttttgttgtagaaatagcttatac 246  Q
    |||||||| ||| || |||||||||||||||||||||||||    
T  4256129 tttaactttattgtatcttttgttgtagaaatagcttatac 4256169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 33339507 - 33339547
Alignment:
Q  206 tttaacttcattttagcttttgttgtagaaatagcttatac 246  Q
    ||||||||||||||| |||||| | ||||||||||||||||    
T  33339507 tttaacttcattttatcttttggtatagaaatagcttatac 33339547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 38578629 - 38578585
Alignment:
Q  99 actgtttggaaaagcttataaaaacaacttataacatattcataa 143  Q
    ||||||||||  | ||||| |||||||||||||||||||||||||    
T  38578629 actgtttggactaacttatgaaaacaacttataacatattcataa 38578585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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