View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_7 (Length: 473)
Name: NF16701_low_7
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 7 - 463
Target Start/End: Complemental strand, 53699745 - 53699288
Alignment:
| Q |
7 |
ttgttttataacgtcacgatataaattgttgttcacaaaaattagtttgtgggagtagcaacaccatatacgtgaaattagttttgcaaacatgtttagt |
106 |
Q |
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| T |
53699745 |
ttgttttataacgtcacgatataaattgttgttcacaaaaattagtttgtgggagtagcaacaccatatacgtgaaattagttttgcaaacatgtttagt |
53699646 |
T |
|
| Q |
107 |
aacaatacttgcatgcaaagttttgctgttaccgttaagaggacctttcaagtattcagtttgtttagaattaaaatgaacttagatttcatataacaaa |
206 |
Q |
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| T |
53699645 |
aacaatacttgcatgcaaagttttgctgttactgttaagaggacctttcaagtattcagtttgtttagaattaaaatgaacttagattgcatataacaaa |
53699546 |
T |
|
| Q |
207 |
catcttgggttttaattcaaatatatatggctaaatttaccactactattcttttctgccacaaattatcaaagactttctcgaacaacaacagttaat- |
305 |
Q |
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| T |
53699545 |
catcttgggttttaattcaaatatatatggctaaatttaccactactattcttttctgccacaaattatcaaagactttctcgaacaacaacagttaata |
53699446 |
T |
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| Q |
306 |
aatatattgaagcggtcattttatcaatatcctcctaccttgaaagatttatttgaattggcctattcaagcttatggtggaaagatgtttgaactcatt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53699445 |
aatatattgaagcggtcattttatcaatatcctcctaccttgaaagatttatttgaattggcctattcaagcttatggtggaaagatgtttgaactcatt |
53699346 |
T |
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| Q |
406 |
tctttgatttgcatcttttcaatttggcatattcaagcttatggctgaatggtctctg |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53699345 |
tctttgatttgcatcttttcaatttggcatattcaagcttatggctgaatggtctctg |
53699288 |
T |
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