View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_8 (Length: 451)
Name: NF16701_low_8
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 24949582 - 24949191
Alignment:
| Q |
1 |
tgcaactcaaggagaaaggtttcaaagtcttttaagttggagagatccaagggctacaacactttttgtaacattttgttttgttgctgctatgattctt |
100 |
Q |
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| T |
24949582 |
tgcaactcaaggagaaaggtttcaaagtcttttaagttggagagatccaagggctacaacactttttgtaacattttgttttgttgctgctatgattctt |
24949483 |
T |
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| Q |
101 |
tatgttactccttttcaagttgtgttactaatcactggcttttatgttctgagacatcctagattcagacataaacttccatcagttcctcttaatttct |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24949482 |
tatgttactccttttcaagttgtgttactaattactggcttttatgttctgagacatcctagattcagacagaaacttccatcagttcctcttaatttct |
24949383 |
T |
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| Q |
201 |
ttaggaggttacctgctagatcagatagcatgttatagatcatcattcatgattatgttcatttgatttgggaatattcatgttgttgcaattatgttgt |
300 |
Q |
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| T |
24949382 |
ttaggaggttacctgctagatcagatagcatgttatagatcatcattcatgattatgttcatttgatttgggaatattcatgttgttgcaattatgttgt |
24949283 |
T |
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| Q |
301 |
gttataaacattcttttaatgtcaagttttatttctttgagtatgatagtttctagataattttactaattgttccaatgatagtgctgtaa |
392 |
Q |
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| T |
24949282 |
gttataaacattcttttaatgtcaagttttatttctttgagtatgatagtttctagataattttactaattgttccaatgatagtgctgtaa |
24949191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 36809755 - 36809669
Alignment:
| Q |
38 |
tggagagatccaagggctacaacactttttgtaacattttgttttgttgctgctatgattctttatgttactccttttcaagttgtg |
124 |
Q |
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|||||||||||||| ||||| |||||||||| ||| ||||| |||||||||| | |||||||| ||||| |||||||||||| |
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| T |
36809755 |
tggagagatccaagagctactgcactttttgtgctattctgtttgattgctgctattgtactttatgtgactccatttcaagttgtg |
36809669 |
T |
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