View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16701_low_9 (Length: 419)
Name: NF16701_low_9
Description: NF16701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16701_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 47501198 - 47501582
Alignment:
| Q |
18 |
caaaggggacaacgcatggcagttaacagcagcaacaatggttgggcttcaaagcattcccgggcttgtcatactttacggaagcctagtgaagaaaaca |
117 |
Q |
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| T |
47501198 |
caaaggggacaacgcatggcaattaacagcagcaacaatggttgggcttcaaagcattcccgggcttgtcatactttacggaagcctagtgaagaaaaca |
47501297 |
T |
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| Q |
118 |
tgggctataaactcagctttcatggccttctatgcatttgcatccgttctcctttgttgggtttcatgggcataccaaatgtcatttggggagaaaatgg |
217 |
Q |
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| T |
47501298 |
tgggctataaactcagctttcatggccttctatgcatttgcatccgttctcctttgttgggtttcatgggcataccaaatgtcatttggggagaaaatgg |
47501397 |
T |
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| Q |
218 |
tatttttcttagggaaaccaaatgtagcattagatgaaaagtttttgttggggaaagcatttttggggaattttcctaatgctacaatggtattttatca |
317 |
Q |
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| T |
47501398 |
tatttttcttagggaaaccaaatgtagcattagatgaaaagtttttgttggggaaagcatttttggggaattttcctaatgctacaatggtattttatca |
47501497 |
T |
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| Q |
318 |
aggtgttttcgctggtcttactttgattttgatagctggtgctttacttgggagaatgaacattcgtgcatggatgttgtttgtg |
402 |
Q |
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| T |
47501498 |
aggtgttttcgctggtcttactttgattttgatagctggtgctttacttgggagaatgaacattcgtgcatggatgttgtttgtg |
47501582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 31605709 - 31605872
Alignment:
| Q |
25 |
gacaacgcatggcagttaacagcagcaacaatggttgggcttcaaagcattcccgggcttgtcatactttacggaagcctagtgaagaaaacatgggcta |
124 |
Q |
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| T |
31605709 |
gacaatgcatggcaactaacagcagcaacattagtaggccttcaaactgttcctgggcttgtaatactctatggcagcatggttaagaaaaaatgggccg |
31605808 |
T |
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| Q |
125 |
taaactcagctttcatggccttctatgcatttgcatccgttctcctttgttgggtttcatgggc |
188 |
Q |
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| T |
31605809 |
taaattcggctttcatggccctatatgcatttgctgctgtactagtttgttgggttttatgggc |
31605872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 378
Target Start/End: Complemental strand, 13350111 - 13350022
Alignment:
| Q |
289 |
tttcctaatgctacaatggtattttatcaaggtgttttcgctggtcttactttgattttgatagctggtgctttacttgggagaatgaac |
378 |
Q |
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| T |
13350111 |
tttccaaatgctactatgatttattttcaatgtgtttttgctgctattactttgattttgatagctggtgctgtgttggggagaatgaac |
13350022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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