View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_high_11 (Length: 511)
Name: NF16702_high_11
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 13 - 492
Target Start/End: Complemental strand, 135270 - 134789
Alignment:
| Q |
13 |
gagatgaaagaacgaccgag--gaaagagacatagttaagagtaagacagaaggagaaagaggcggagaaagttgtaatacctcataccaacactcgatc |
110 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
135270 |
gagatgaaagaacgaccgagaggaaagagacatagttaagagtaagacagaaggagaaagaggcggagaaagttgtaatacctcataccaacactcgatc |
135171 |
T |
|
| Q |
111 |
atttattgtgtcgttgtatcacgtcattaaaaccttcatatttctcaaatttggtattttttaaagaaatttcataaagatatggggtgtataagattcc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
135170 |
atttattgtgtcgttgtatcacgtcattaacatcttcgtattcgtcaaatttggtattttttaaagaaatttcataaagacgtggggtgtataagattcc |
135071 |
T |
|
| Q |
211 |
ttcgaaccaaaaggtcttcatctctgggcagtcttcaatttttatttgccaacattgtggcatctcaatatagcaagggaaagagctttgaccgaaacat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
135070 |
ttcgaaccaaaaggtcttcatctctgggcagtcttcaatttttattcgccgacattgtggcatctcaatatagcaagggaaagagctttgaccgaaacat |
134971 |
T |
|
| Q |
311 |
ttgaggctaggaagcttctgcagttcaataatcattaatttcgggaatttaattttagctttctgttgtacacaatcagtaggattgcaattattcccaa |
410 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
134970 |
ttgaggctaggaagcttctgcagttcaatcttcattaatttcgggaatttaattttagctttctgttgtacacaatcagtaggattgcaattattcccaa |
134871 |
T |
|
| Q |
411 |
tgatctccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccggaag |
492 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
134870 |
tgatctccttcatcttctggcattcatacacaccaattaaccacaaatttggaatgcttgtgagcacggaaacatccggaag |
134789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 390 - 492
Target Start/End: Complemental strand, 157409 - 157307
Alignment:
| Q |
390 |
taggattgcaattattcccaatgatctccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccgg |
489 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||| | |
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| T |
157409 |
taggattgtaattattcccaatgatctccttcatcttctggcattcatacacaccgataaaccacaaatttggaatgcttgtgagcacggaaacatccag |
157310 |
T |
|
| Q |
490 |
aag |
492 |
Q |
| |
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||| |
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|
| T |
157309 |
aag |
157307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 88 - 491
Target Start/End: Complemental strand, 34377689 - 34377300
Alignment:
| Q |
88 |
atacctcataccaa-cactcgatcatttattgtgtcgttgtatcacgtcattaaaaccttcatatttctcaaatttggtattttttaaagaaatttcata |
186 |
Q |
| |
|
|||||||| ||||| ||| | |||||||||| |||||||||||||| ||||||| | |||||| | | ||||||||||||| || || | ||||| ||| |
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| T |
34377689 |
atacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctatgtcaaatttggtatcttctacacaaattctata |
34377590 |
T |
|
| Q |
187 |
aagatatggggtgtataagattccttcgaaccaaaaggtcttcatctctgggcagtcttcaatttttatttgccaacattgtggcatctcaatatagcaa |
286 |
Q |
| |
|
|| | ||| ||||| |||||||| | | |||||||||||||||||||||| ||||| | |||| ||| | |||| ||||||||||| |||||| |
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|
| T |
34377589 |
aatacctggagtgtacaagattccattgtaccaaaaggtcttcatctctggacagtcattaattagtatccactcacatgctggcatctcaacgtagcaa |
34377490 |
T |
|
| Q |
287 |
gggaaagagctttgaccgaaacatttgaggctaggaagcttctgcagttcaataatcattaatttcgggaatttaattttagctttctgttgtacacaat |
386 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| |||| ||| |||| | || ||||||||||| |||||||||||||||| ||||| |
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| T |
34377489 |
tggaaagagctttcactgaaacatttgaggctaggaagcttctttagtttaattttcatcagctttgggaatttaatcttagctttctgttgtaaacaat |
34377390 |
T |
|
| Q |
387 |
cagtaggattgcaattattcccaatgatctccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatc |
486 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||| ||| ||| |||| |||||| |||||||| |||||||||||| |
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| T |
34377389 |
---------------tattcccaatgatctccttcatcttctcgcattcagacacatgaatcgacatcaaacttggaaggcttgtgaccacggaaacatc |
34377305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 88 - 491
Target Start/End: Original strand, 34549691 - 34550080
Alignment:
| Q |
88 |
atacctcataccaa-cactcgatcatttattgtgtcgttgtatcacgtcattaaaaccttcatatttctcaaatttggtattttttaaagaaatttcata |
186 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||| |||||||||||||| ||||||| | |||||| ||| |||||||| ||||||| || | |||| || | |
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| T |
34549691 |
atacctcacaccaaacactcaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttagtattttctacataaatctcttc |
34549790 |
T |
|
| Q |
187 |
aagatatggggtgtataagattccttcgaaccaaaaggtcttcatctctgggcagtcttcaatttttatttgccaacattgtggcatctcaatatagcaa |
286 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||||||||||||||||||||||||||| | |||| ||| | ||||| ||||||||||| ||||||| |
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|
| T |
34549791 |
aagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctgggcagtcattaattactatcaactcacattttggcatctcaacatagcaa |
34549890 |
T |
|
| Q |
287 |
gggaaagagctttgaccgaaacatttgaggctaggaagcttctgcagttcaataatcattaatttcgggaatttaattttagctttctgttgtacacaat |
386 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||||||||||| ||| || | ||| | || |||||||| ||||||||||||||| ||||| |
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| T |
34549891 |
gggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaatatttcctccaatattggaaatttaatcttagctttctgttgtgaacaat |
34549990 |
T |
|
| Q |
387 |
cagtaggattgcaattattcccaatgatctccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatc |
486 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| ||||| ||| ||| |||| |||||| |||||||| |||||||||||| |
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|
| T |
34549991 |
---------------tattcctaatgatctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtgaccacggaaacatc |
34550075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 330
Target Start/End: Original strand, 15890591 - 15890735
Alignment:
| Q |
186 |
aaagatatggggtgtataagattccttcgaaccaaaaggtcttcatctctgggcagtcttcaatttttatttgccaacattgtggcatctcaatatagca |
285 |
Q |
| |
|
|||||| ||| ||||| ||| |||| | ||||||||| ||||||||||| |||||||||||||| | ||| |||| ||||| |||| |||| | |
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|
| T |
15890591 |
aaagatttggtgtgtacaaggttccattgaaccaaaaagtcttcatctcatggcagtcttcaattatgattaaataacagcttggcagttcaacatagga |
15890690 |
T |
|
| Q |
286 |
agggaaagagctttgaccgaaacatttgaggctaggaagcttctg |
330 |
Q |
| |
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|||||||||||| ||| ||||||||| ||| | ||||||||||| |
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|
| T |
15890691 |
agggaaagagctctgagagaaacatttaaggttgggaagcttctg |
15890735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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