View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16702_high_13 (Length: 498)
Name: NF16702_high_13
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 20 - 483
Target Start/End: Complemental strand, 1875823 - 1875360
Alignment:
| Q |
20 |
tttgcaacaccaagaagtgccacacaccctccactccttccaccaaatttatactgtcctgctagtccaccagcaccatggcaagatggcattgcaccaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1875823 |
tttgcaacaccaagaagtgccacacaccctccactccttccaccaaatttatactgtcctgctagtccaccagcaccatggcaagatggcattgcaccaa |
1875724 |
T |
|
| Q |
120 |
accaacaaccaaccaaattcatcaacccaactgtcactgaaagtgaagtgactgaaaagtccttttcaggaaacaaatcctttgacaacttacaaacagc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1875723 |
accaacaaccaaccaaattcatcaacccaactgtcactgaaagtgaagtgactgaaaagtccttttcaggaaacaaatcctttgacaacttacaaacagc |
1875624 |
T |
|
| Q |
220 |
tatcacagagttcaagattgtcaaaggaagttgaggaattgtacctttgataaaacctttcttccaagcatgtttagtgaatttcaccacttctattgaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1875623 |
tatcacagagttcaagattgtcaaaggaagttgaggaattgtacctttgataaaacctttcttccaagcatgtttagtgaatttcaccacttctattgaa |
1875524 |
T |
|
| Q |
320 |
gagggtccaaacttaatttcatgcaccacattaggcctttttatgaatgccaaaataacacctaaaacaaagattacaaaagcagaaggaagtgaaaaaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1875523 |
gagggtccaaacttaatttcatgcaccacattaggcctttttatgaatgccaaaataacacctaaaacaaagattacaaaagcagaaggaagtgaaaaaa |
1875424 |
T |
|
| Q |
420 |
caatctttttcactctactagtcttcnnnnnnncaccactttcttcactgttacaacacctatg |
483 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||||||||||| |||||||||||||| |
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|
| T |
1875423 |
gaatctttttcactctacttgtcctctttttttcaccactttcttcactattacaacacctatg |
1875360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 20 - 427
Target Start/End: Complemental strand, 1808219 - 1807812
Alignment:
| Q |
20 |
tttgcaacaccaagaagtgccacacaccctccactccttccaccaaatttatactgtcctgctagtccaccagcaccatggcaagatggcattgcaccaa |
119 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||| |
|
|
| T |
1808219 |
tttgcaaaaccaagaagtgcaacacaccctccactccttcctccaaatttatactgtcctgctagtcctccagcaccatgacaagttggcacagcaccaa |
1808120 |
T |
|
| Q |
120 |
accaacaaccaaccaaattcatcaacccaactgtcactgaaagtgaagtgactgaaaagtccttttcaggaaacaaatcctttgacaacttacaaacagc |
219 |
Q |
| |
|
||||| ||||||| |||||||| | |||||||||||||||| ||| || |||||||| ||| ||||||| || | ||| |||| || ||||||||||| |
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|
| T |
1808119 |
accaagaaccaactaaattcattagtccaactgtcactgaaattgatgtaactgaaaattccctttcagggaaaagatctgttgataatttacaaacagc |
1808020 |
T |
|
| Q |
220 |
tatcacagagttcaagattgtcaaaggaagttgaggaattgtacctttgataaaacctttcttccaagcatgtttagtgaatttcaccacttctattgaa |
319 |
Q |
| |
|
|||||| |||||||| |||| ||| |||||||| ||||||| |||||| |||||||||||||||||| | |||||||||||||| ||||||||| | |
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|
| T |
1808019 |
tatcactgagttcaacattgacaatggaagttgtggaattgcacctttaataaaacctttcttccaattttctttagtgaatttcattacttctatttta |
1807920 |
T |
|
| Q |
320 |
gagggtccaaacttaatttcatgcaccacattaggcctttttatgaatgccaaaataacacctaaaacaaagattacaaaagcagaaggaagtgaaaaaa |
419 |
Q |
| |
|
||||||||||| |||||||||||||| || | | ||| |||| || |||||| | || || ||||||| || ||||||||||||||||||||||| |
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|
| T |
1807919 |
gagggtccaaatttaatttcatgcacaacttcacttcttcttataaaaaccaaaactattcccaatacaaagactataaaagcagaaggaagtgaaaaaa |
1807820 |
T |
|
| Q |
420 |
caatcttt |
427 |
Q |
| |
|
||||||| |
|
|
| T |
1807819 |
taatcttt |
1807812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 27 - 436
Target Start/End: Original strand, 25798000 - 25798409
Alignment:
| Q |
27 |
caccaagaagtgccacacaccctccactccttccaccaaatttatactgtcctgctagtccaccagcaccatggcaagatggcattgcaccaaaccaaca |
126 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||| |||| ||||| |||||||||||| |
|
|
| T |
25798000 |
caccaagaagtgccacacaccctccacttcttccaccaaatttatattgtcctgcgagtccaccggcaccatgacaagttggcacacaaccaaaccaaca |
25798099 |
T |
|
| Q |
127 |
accaaccaaattcatcaacccaactgtcactgaaagtgaagtgactgaaaagtccttttcaggaaacaaatcctttgacaacttacaaacagctatcaca |
226 |
Q |
| |
|
||| | ||||||||| | |||||||||||||||| |||||| |||||||| |||||||| ||||| | ||| |||| ||||||||||||||||| ||| |
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|
| T |
25798100 |
accgatcaaattcattagtccaactgtcactgaaattgaagtaactgaaaattccttttctggaaaaagatctgttgataacttacaaacagctatgaca |
25798199 |
T |
|
| Q |
227 |
gagttcaagattgtcaaaggaagttgaggaattgtacctttgataaaacctttcttccaagcatgtttagtgaatttcaccacttctattgaagagggtc |
326 |
Q |
| |
|
|||||||| |||| ||| |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
25798200 |
gagttcaaaattgacaatggaagttgaggaattgcacctttgacaaaacctttcttccatgcatgtttagtgaatttcaccaattctattgaagttggtc |
25798299 |
T |
|
| Q |
327 |
caaacttaatttcatgcaccacattaggcctttttatgaatgccaaaataacacctaaaacaaagattacaaaagcagaaggaagtgaaaaaacaatctt |
426 |
Q |
| |
|
|||| |||||||||| || || | | | || |||| || |||||| || || || ||||||| |||||| ||||||||||||||||||| |||||| |
|
|
| T |
25798300 |
caaatttaatttcattgacaacttcatgttttcttataaaaaccaaaacaatccccaacacaaagactacaaatgcagaaggaagtgaaaaaataatctt |
25798399 |
T |
|
| Q |
427 |
tttcactcta |
436 |
Q |
| |
|
| ||| |||| |
|
|
| T |
25798400 |
tctcaatcta |
25798409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 20 - 429
Target Start/End: Original strand, 49993150 - 49993559
Alignment:
| Q |
20 |
tttgcaacaccaagaagtgccacacaccctccactccttccaccaaatttatactgtcctgctagtccaccagcaccatggcaagatggcattgcaccaa |
119 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| || ||||||| ||||||| |
|
|
| T |
49993150 |
tttgcagcaccaagaattgccacacaccctccactcctcccaccaaatttatactgtcctgctaatcctccagcaccatgacagcatggcatagcaccaa |
49993249 |
T |
|
| Q |
120 |
accaacaaccaaccaaattcatcaacccaactgtcactgaaagtgaagtgactgaaaagtccttttcaggaaacaaatcctttgacaacttacaaacagc |
219 |
Q |
| |
|
|||||| ||| | | |||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || | || |||||||| |
|
|
| T |
49993250 |
accaaccacccaaaagattcattaacccaactgtcactgaaagtgaagttactgaaaagtccttggttggaaataaatcagaggatagtttgcaaacagc |
49993349 |
T |
|
| Q |
220 |
tatcacagagttcaagattgtcaaaggaagttgaggaattgtacctttgataaaacctttcttccaagcatgtttagtgaatttcaccacttctattgaa |
319 |
Q |
| |
|
|||||| |||||||| |||| ||| || ||||| ||||| ||||| || |||||||||| ||||| |||||||||| |||||||| | ||||| | |
|
|
| T |
49993350 |
tatcaccgagttcaaaattgacaagggtagttgtggaatagtaccctttataaaaccttgtttccatgcatgtttagaaaatttcactaactctatatta |
49993449 |
T |
|
| Q |
320 |
gagggtccaaacttaatttcatgcaccacattaggcctttttatgaatgccaaaataacacctaaaacaaagattacaaaagcagaaggaagtgaaaaaa |
419 |
Q |
| |
|
|| |||||||| ||||||||||| | ||||||||||||| |||| || ||||||| ||||| |||||||| | || |||||||||||| |||||||||| |
|
|
| T |
49993450 |
gaaggtccaaatttaatttcatgtatcacattaggccttcttataaaacccaaaatcacacccaaaacaaatactataaaagcagaaggtagtgaaaaaa |
49993549 |
T |
|
| Q |
420 |
caatcttttt |
429 |
Q |
| |
|
|||||||||| |
|
|
| T |
49993550 |
caatcttttt |
49993559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 2862258 - 2862147
Alignment:
| Q |
50 |
ccactccttccaccaaatttatactgtcctgctagtccaccagcaccatggcaagatggcattgcaccaaaccaacaaccaaccaaattcatcaacccaa |
149 |
Q |
| |
|
|||||||| || ||||| ||||||| || || | ||||||||| ||||||||| | ||||| |||||||||||||||||||| |||||||||| |||| |
|
|
| T |
2862258 |
ccactcctacctccaaacctatactgaccagccaatccaccagctccatggcaacaaggcatagcaccaaaccaacaaccaacaaaattcatcactccaa |
2862159 |
T |
|
| Q |
150 |
ctgtcactgaaa |
161 |
Q |
| |
|
| ||||||||| |
|
|
| T |
2862158 |
cactcactgaaa |
2862147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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