View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_high_19 (Length: 457)
Name: NF16702_high_19
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_high_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 266 - 457
Target Start/End: Complemental strand, 2569543 - 2569356
Alignment:
| Q |
266 |
cagtgcaaatattcattatgtctttttggagtttgttaagaaatatgcacaaatataaaagagtgaattcaaattagtacaataaattgtaaaagttaat |
365 |
Q |
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| T |
2569543 |
cagtgcaaatattcattatgtctttttggagtttgttaagaaa-atgcacaaatataaaagagtgaat---aattagtacaataaattgtaaaagttaat |
2569448 |
T |
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| Q |
366 |
tatagtgaccaactctcaaggagattttttattttaaagaaactctctaggagattcctttatgataacatcatgtaatataattggaaacc |
457 |
Q |
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| T |
2569447 |
tatagtgaccaactctcaaggagattttttcttttaaagaaactctctaggagattcctttatgataacatcatgtaatataattggaaacc |
2569356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 2569795 - 2569616
Alignment:
| Q |
14 |
acctgtgtgaattgaggtgtatgtgaattaagttcttgtgtgtaaatttatgaacaaaattgtcataacctcgtttataaacacatccacctataatacg |
113 |
Q |
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| T |
2569795 |
acctgtgtgaattgaggtgtatgtgaattaagttcttgtgtgtaaatttatgaacaaaattgtcataacctcgtttataaacatatccacctataatacg |
2569696 |
T |
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| Q |
114 |
tcggaaaaaattatagcacaaaatgtgcaacaacnnnnnnntggaacgctaaaaatgggtatgcagaatgggttcgaattt |
194 |
Q |
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| T |
2569695 |
tcgga-aaaattatagcacaaaatgtgcaacaacaaagaaatggaacgctaaaaatgggtatgcagaatgggttcgaattt |
2569616 |
T |
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