View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_high_20 (Length: 454)
Name: NF16702_high_20
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_high_20 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 190 - 454
Target Start/End: Original strand, 46632995 - 46633257
Alignment:
| Q |
190 |
aaatagatttatatattaagcttgcaacctttggttgaactagataagccacattaagaatgtgttggtattttctctcgacagtaccatattgttgagg |
289 |
Q |
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| T |
46632995 |
aaatagatttatatattaaacttgcaaactttggttgaactagataagcca--ttaagaatgtgttggtattttctctcgacagtaccatattgttgagg |
46633092 |
T |
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| Q |
290 |
acactcaacaaacattctttggtaaataatgccctcaaaattgtccaagtcgtgcataaaagttcacaccattatccaagtgaatcaactagaaaattgt |
389 |
Q |
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| T |
46633093 |
acactcaacaaacattatttggtaaataatgccctcaaaattgtccaagtcgtgcataaaagttcacaccattatccaagtgaatcaactagaaaattgt |
46633192 |
T |
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| Q |
390 |
gtttcaatataagaacgaaaattaaccaagtgacctctaattttacttttttgtttcatcaaaat |
454 |
Q |
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| T |
46633193 |
gtttcaatataagaacgaaaattaaccaagtgacctctaattttacttttttgtttcatcaaaat |
46633257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 46632774 - 46632955
Alignment:
| Q |
10 |
aagaaaatatctgagttgtcctaaacctttaatcttgaatttatcatgaaggaaagacttacctgttggatctcattaaaatagttaattacctgttaag |
109 |
Q |
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| T |
46632774 |
aagaaaatatctgagttgtcctaaacctttaatcttgaatttatcacgaaggaaagacttacctgttggatctcattaaaatagttaattacctg-taag |
46632872 |
T |
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| Q |
110 |
tactatatcgtccacatagattatcaaggcagtaaagtgatagtaaaaagggaataatccaagagaaataagagaatcagaaa |
192 |
Q |
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| T |
46632873 |
tactatatcgtccacatagattatcaaggcagtaaagtgatagtaaaaagggaataatccaagagaaaaaagagaatcagaaa |
46632955 |
T |
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