View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16702_high_26 (Length: 438)
Name: NF16702_high_26
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_high_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 30002155 - 30001738
Alignment:
| Q |
1 |
ttattgatgtaaaggagcaaatcagggttacaagtttaaaaaccaatggtcacataataggatttaagtaaacaaacccaacaaagtataccaagccagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30002155 |
ttattgatgtaaaggagcaaatcagggttacaagtttaaaaaccaatggtcacataataggatttaagtaaacaaacccaacaaagtataccaagccagc |
30002056 |
T |
|
| Q |
101 |
cacgttatatactaacatttagtataatctagtgatggaaaatttgacagtaaacaagggaaaattatgaattcctccgaaagtatcaacttcttattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30002055 |
cacgttatatactaacatttagtataatctagtgatggaaaatttgacagtaaacaagggaaaattatgaattcctccgaaagtatcaacttcttattca |
30001956 |
T |
|
| Q |
201 |
cactaaacacatagaataaatagtaaatttggtccaatgtgtgaggccgtgtcattatagtccttgaaagtaccaaagttataaaatcatagaccaaact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30001955 |
cactaaacacatagaataaatagtaaatttggtccaatgtgtgaggccgtgtcattatagtccttgaaagaaccaaagttataaaatcatagaccaaact |
30001856 |
T |
|
| Q |
301 |
gactaacaaaagcgacatccgaaaaccaaacttagcaatgaaagacctatagaagaactaaactgactataaaaaggcacgttcgtgaatattttttata |
400 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30001855 |
gactaacaaaagagacatccgaaaaccaaacttagcaatgaaagacctatagaagaactaaactgactataaaaaggcacgttcgtgaatattttttata |
30001756 |
T |
|
| Q |
401 |
cattcagggggctatagt |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
30001755 |
cattcagggggctatagt |
30001738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University