View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16702_high_27 (Length: 419)

Name: NF16702_high_27
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16702_high_27
NF16702_high_27
[»] chr1 (26 HSPs)
chr1 (1-414)||(45531383-45531791)
chr1 (101-369)||(45525386-45525645)
chr1 (101-372)||(35476216-35476486)
chr1 (113-323)||(35224840-35225048)
chr1 (132-376)||(35262955-35263199)
chr1 (180-364)||(35295848-35296032)
chr1 (101-220)||(35248183-35248302)
chr1 (162-342)||(35211937-35212120)
chr1 (134-342)||(35270380-35270590)
chr1 (128-342)||(8638840-8639055)
chr1 (254-375)||(34309415-34309536)
chr1 (145-376)||(35190329-35190551)
chr1 (162-236)||(35204870-35204944)
chr1 (180-331)||(35194484-35194636)
chr1 (128-226)||(35219003-35219099)
chr1 (139-366)||(35276491-35276712)
chr1 (163-228)||(35147339-35147404)
chr1 (163-228)||(35199907-35199972)
chr1 (278-324)||(35281403-35281449)
chr1 (285-342)||(35189408-35189465)
chr1 (278-323)||(35248360-35248405)
chr1 (243-342)||(35252128-35252230)
chr1 (290-331)||(35216077-35216118)
chr1 (113-157)||(34309350-34309394)
chr1 (274-366)||(35200018-35200110)
chr1 (77-105)||(45531354-45531382)
[»] chr3 (4 HSPs)
chr3 (179-331)||(899778-899933)
chr3 (258-329)||(17664594-17664665)
chr3 (258-329)||(19246997-19247068)
chr3 (195-226)||(53924390-53924421)
[»] chr2 (1 HSPs)
chr2 (261-363)||(33138612-33138714)
[»] chr7 (1 HSPs)
chr7 (254-331)||(38631950-38632027)


Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 45531383 - 45531791
Alignment:
Q  1 ctttacgaatatactttaagaagagacagtttaaacaagagagtatattagatactaaaactatacgaagagaacatttaaacaagagtatgttacatac 100  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45531383 ctttacgaatatactttaagaagagacagtttaaacaagag--tatattaaatactaaaactttacgaagagaacatttaaacaagagtatgttacatac 45531480  T
Q  101 tgaaaagttggaacttcaaatcttcaagcactattctaccatccaagacacaagacccatgacatagttcactgaaagttgcttaattgtctaccttagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45531481 tgaaaagttggaacttcaaatcttcaagcactattctaccatccaagacacaagacccatgacatagttcactgaaagttgcttaattgtctaccttagg 45531580  T
Q  201 cctaacttctattccttcaagaaagagattcccctttgtctcaccagccttta-tctcgataacactcatatggacttcttcattttcaaggcctgaatt 299  Q
    |||||||||||||||||||||||||| ||||||    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  45531581 cctaacttctattccttcaagaaagaaattccc----gtctcaccagcctttattttcgataacactcatatggacttcttcattttcaaggcctgaatt 45531676  T
Q  300 gaagaactctcccatctcaatctcccaccacctaccacttctccaactaggccgcggcaatcctactactttgttatctgatcttatcaaacaattgcaa 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45531677 gaagaactctcccatctcaatctcccaccacctaccacttctccaactaggccgcggcaatcctactactttgttatctgatcttatcaaacaattgcaa 45531776  T
Q  400 aatcctctttctctg 414  Q
    |||||||||||||||    
T  45531777 aatcctctttctctg 45531791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 101 - 369
Target Start/End: Original strand, 45525386 - 45525645
Alignment:
Q  101 tgaaaagttggaacttcaaatcttcaagcactattctaccatccaagacacaagacccatgacatagttcactgaaagttgcttaattgtctaccttagg 200  Q
    ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||  ||| |      || |||||||||||||||||||||||    
T  45525386 tgaaaagctgaaactacaaatcttcaagcactattctaccatccaagacacaagacccatggtataat------aatgttgcttaattgtctaccttagg 45525479  T
Q  201 cctaacttctattccttcaagaaagagattcccctttgtctcaccagcctttatctcgataacactcatatggacttcttcattttcaaggcctgaattg 300  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  45525480 cctaacttctattccttcaagaaagaaattccccttggtctcaccagcctttatctcgataacactcatctggacttcttcattttcaaggcctgaatt- 45525578  T
Q  301 aagaactctcccatctcaatctcccaccacctaccacttctccaactaggccgcggcaatcctactact 369  Q
      |||||||||||||||||||||| |||||| | ||||||||  || ||| ||||||||||||||||||    
T  45525579 --gaactctcccatctcaatctccaaccacccatcacttctcacaccaggacgcggcaatcctactact 45525645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 101 - 372
Target Start/End: Original strand, 35476216 - 35476486
Alignment:
Q  101 tgaaaagttggaacttcaaatcttcaagcactattctaccatccaagacacaagacccatgacatagttcactgaaagttgcttaattgtctaccttagg 200  Q
    ||||||||||  |||||||||||||||||| ||||||  |||||||||| |||||||| | ||||| |||| |||| ||||||||||||||| |||||||    
T  35476216 tgaaaagttgagacttcaaatcttcaagcagtattctgtcatccaagacgcaagacccct-acataattcagtgaatgttgcttaattgtcttccttagg 35476314  T
Q  201 cctaacttctattccttcaagaaagagattcccctttgtctcaccagcctttatctcgataacactcatatggacttcttcattttcaaggcctgaattg 300  Q
     ||||||||||||||||||||||||| ||| ||||| | |  | || | | |||||| |||||||| || ||||||||| ||  | | |||| | ||||     
T  35476315 tctaacttctattccttcaagaaagaaatttcccttcggcaaatcaccatctatctcaataacactaatgtggacttctacacctccgaggcataaatta 35476414  T
Q  301 aagaactctcccatctcaatctcccaccacctaccacttctccaactaggccgcggcaatcctactactttg 372  Q
    |||||||||||||||||||||||| |||||| | ||| ||||  |||||| ||  | | |||||||||||||    
T  35476415 aagaactctcccatctcaatctccaaccacccatcacgtctcacactaggacgtcgtagtcctactactttg 35476486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 113 - 323
Target Start/End: Original strand, 35224840 - 35225048
Alignment:
Q  113 acttcaaatcttcaagcactattctaccatccaagacacaagacccatgacatagttcactgaaagttgcttaattgtctaccttaggcctaacttctat 212  Q
    |||||||||||| || ||||  ||| | ||||||||||||| ||| ||| |||||||||  ||| ||||| |||| |||| |||||||||||||||||||    
T  35224840 acttcaaatctttaaacactggtctgctatccaagacacaa-acctatg-catagttcatggaatgttgcctaatggtcttccttaggcctaacttctat 35224937  T
Q  213 tccttcaagaaagagattcccctttgtctcaccagcctttatctcgataacactcatatggacttcttcattttcaaggcctgaattgaagaactctccc 312  Q
    |||||||| ||||| |   | |||    | |||| ||||||| || ||||||||||| ||||||||||||| ||| ||||||||| ||||||||||||||    
T  35224938 tccttcaacaaagaaacctctcttccaatgaccaccctttatatcaataacactcatttggacttcttcatcttctaggcctgaaatgaagaactctccc 35225037  T
Q  313 atctcaatctc 323  Q
    |||||||||||    
T  35225038 atctcaatctc 35225048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 132 - 376
Target Start/End: Original strand, 35262955 - 35263199
Alignment:
Q  132 tattctaccatccaagacacaagacccatgacatagttcactgaaagttgcttaattgtctaccttaggcctaacttctattccttcaagaaagagattc 231  Q
    |||||| ||| |||||||||||||||| |  ||||||  | | || | ||||||||||| |   |||||||||| ||||||||||||||||||||||       
T  35262955 tattctgccaaccaagacacaagaccccttgcatagtatagtaaatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagacca 35263054  T
Q  232 ccctttgtctcaccagcctttatctcgataacactcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacc 331  Q
    | |||    | ||||||||||||||| |  | | |||| ||||||||||||||||| | ||||||| |||||||||| ||||||||||||||| ||||||    
T  35263055 ctcttccaattaccagcctttatctctaacaaattcatctggacttcttcattttctatgcctgaactgaagaactcccccatctcaatctccaaccacc 35263154  T
Q  332 taccacttctccaactaggccgcggcaatcctactactttgttat 376  Q
     | | ||||||  |||||| ||  ||||||||||| || ||||||    
T  35263155 catcgcttctcacactaggacgttgcaatcctactgctctgttat 35263199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 180 - 364
Target Start/End: Complemental strand, 35296032 - 35295848
Alignment:
Q  180 tgcttaattgtctaccttaggcctaacttctattccttcaagaaagagattcccctttgtctcaccagcctttatctcgataacactcatatggacttct 279  Q
    |||||||||  || ||||||||||||||||||||||||||||||| | |     |||   || |||| ||||| | || ||||||||||| |||||||||    
T  35296032 tgcttaatttccttccttaggcctaacttctattccttcaagaaataaacctgtcttcccctgaccaccctttgtatccataacactcatttggacttct 35295933  T
Q  280 tcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacctaccacttctccaactaggccgcggcaatccta 364  Q
    |||| | | | |||||||||||||||||||||||||||||||||| |||||| | ||||||||  ||||||| |  |||||||||    
T  35295932 tcatctactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatccta 35295848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 35248183 - 35248302
Alignment:
Q  101 tgaaaagttggaacttcaaatcttcaagcactattctaccatccaagacacaagacccatgacatagttcactgaaagttgcttaattgtctaccttagg 200  Q
    ||||||||||||||||||||||||||| |  | |||| |||||||||||| ||||||| |  ||||||||| |||| ||||||||||||| |  ||||||    
T  35248183 tgaaaagttggaacttcaaatcttcaaacgttgttctgccatccaagacataagaccccttgcatagttcagtgaatgttgcttaattgtattacttagg 35248282  T
Q  201 cctaacttctattccttcaa 220  Q
     |||||||||||||||||||    
T  35248283 tctaacttctattccttcaa 35248302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 162 - 342
Target Start/End: Original strand, 35211937 - 35212120
Alignment:
Q  162 acatagttcactgaaagttgcttaattgtctaccttaggcctaacttctattccttcaagaaagagattcccctttgtctcaccagccttta---tctcg 258  Q
    |||||| ||| |||| |||| |||||||||||||||||| |||| |||||||||||||||| ||| ||| |||||    ||  ||  ||  |   |||||    
T  35211937 acataggtcaatgaatgttgtttaattgtctaccttaggtctaagttctattccttcaagatagaaatttcccttctcatcgtcactctcaaatttctcg 35212036  T
Q  259 ataacactcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacctaccacttctc 342  Q
    | ||||||||| |||| |||||||| ||||||||  |||||||||||||||||||||||||||||| |||||| | ||||||||    
T  35212037 acaacactcatttggatttcttcatcttcaaggctagaattgaagaactctcccatctcaatctccaaccacccatcacttctc 35212120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 134 - 342
Target Start/End: Original strand, 35270380 - 35270590
Alignment:
Q  134 ttctaccatccaagacacaagacccatgacatagttcactgaaagttgcttaattgtctac--cttaggcctaacttctattccttcaagaaagagattc 231  Q
    |||| ||||||| ||| |||||||| |  ||||||||| |||| |||| |||||||| |    |||||||||||||||||||||||||||||  |||       
T  35270380 ttctgccatccacgacccaagaccccttgcatagttcagtgaatgttggttaattgtgttatacttaggcctaacttctattccttcaagaactagacct 35270479  T
Q  232 ccctttgtctcaccagcctttatctcgataacactcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacc 331  Q
    | |||    | |||| ||||| |||  || ||| |||| ||||||||||||||||| | |||||||||||||||||| ||||||||||||||| ||||||    
T  35270480 ctcttccaattaccaccctttgtctgtatcacattcatctggacttcttcattttctatgcctgaattgaagaactcccccatctcaatctccaaccacc 35270579  T
Q  332 taccacttctc 342  Q
     | ||||||||    
T  35270580 catcacttctc 35270590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 342
Target Start/End: Original strand, 8638840 - 8639055
Alignment:
Q  128 gcactattctaccatccaagacacaagacccatgacatagttcactgaaagttgcttaattgtctaccttaggcctaacttctattccttcaagaaagag 227  Q
    ||||||||||||||||||||||||||||||| |  ||||||| | |  |  ||| ||| || ||| |||| |||||||||||||||||||||| |||||     
T  8638840 gcactattctaccatccaagacacaagacccctc-catagtttagtttatattgatta-ttatcttccttgggcctaacttctattccttcaacaaagaa 8638937  T
Q  228 attccccttt---gtctcaccagcctttatctcgataacactcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcc 324  Q
    |   | |||    || | |||| |||||||| |  ||| |||||| ||||||||||||| ||| | |||||||||||||||||||||||||||| |||||    
T  8638938 acctctcttccaagtataaccatcctttatcccagtaatactcatttggacttcttcatcttctaagcctgaattgaagaactctcccatctcagtctcc 8639037  T
Q  325 caccacctaccacttctc 342  Q
     |||||| | ||||||||    
T  8639038 aaccacccatcacttctc 8639055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 375
Target Start/End: Original strand, 34309415 - 34309536
Alignment:
Q  254 tctcgataacactcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacctaccacttctccaactaggccg 353  Q
    |||||| ||| ||||| |||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |||| | | |||||||   | |||| ||    
T  34309415 tctcgacaacgctcatttggatttcttcatcttcaaggcttgaattgaagaactctcccatctcaatctccaaccatccatcacttcttacattaggacg 34309514  T
Q  354 cggcaatcctactactttgtta 375  Q
      ||||||||| ||||||||||    
T  34309515 ttgcaatcctaatactttgtta 34309536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 376
Target Start/End: Original strand, 35190329 - 35190551
Alignment:
Q  145 aagacacaagacccatgacatagttcactgaaagttgcttaattgtctaccttaggcctaacttctattccttcaagaaagagattcccctttgtctcac 244  Q
    ||||| |||||||| |  |||||||||| ||| |||||| ||| ||||  ||||||||||||||||||||||||||||||||||    ||| | |  ||     
T  35190329 aagacgcaagaccccttgcatagttcacggaatgttgctgaatggtcttacttaggcctaacttctattccttcaagaaagaga----cctctcttcca- 35190423  T
Q  245 cagcctttatctcgataacactcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacctaccacttctcca 344  Q
     |   ||| ||||  ||||| |||| |||||||| ||   ||| ||||||||||||||||||||||| |||||||||||| |||||| | ||||||||      
T  35190424 -attatttgtctccttaacattcatttggacttcatc---ttctaggcctgaattgaagaactctccgatctcaatctccaaccacccatcacttctcac 35190519  T
Q  345 actaggccgcggcaatcctactactttgttat 376  Q
    |||||| ||  ||||||||||| || ||||||    
T  35190520 actaggacgttgcaatcctactgctctgttat 35190551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 35204870 - 35204944
Alignment:
Q  162 acatagttcactgaaagttgcttaattgtctaccttaggcctaacttctattccttcaagaaagagattcccctt 236  Q
    |||||| ||| ||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||| |||||    
T  35204870 acataggtcaatgaaagttgtttaattgtataccttaggcctaagttctattccttcaagaaagaaatttccctt 35204944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 331
Target Start/End: Original strand, 35194484 - 35194636
Alignment:
Q  180 tgcttaattgtctaccttaggcctaacttctattccttcaa-gaaagagattcccctttgtctcaccagcctttatctcgataacactcatatggacttc 278  Q
    ||||||||| | | ||||||| |||||||||||||||| || |||||| ||| | |||  ||||| ||  |||  || | ||||||||||| || |||||    
T  35194484 tgcttaattcttttccttaggactaacttctattccttaaaagaaagaaatttctcttcttctcaacactcttgttcacaataacactcatttgcacttc 35194583  T
Q  279 ttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacc 331  Q
    ||||| |||||||| || |||||||||||| ||||| ||||||||| ||||||    
T  35194584 ttcatcttcaaggcttggattgaagaactcccccatttcaatctccaaccacc 35194636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 35219003 - 35219099
Alignment:
Q  128 gcactattctaccatccaagacacaagacccatgacatagttcactgaaagttgcttaattgtctaccttaggcctaacttctattccttcaagaaaga 226  Q
    ||||||||||   |||||||||||||||||| || ||||||||| || | |||| ||| |||||| ||||||||||||||||||||||||||| |||||    
T  35219003 gcactattctgaaatccaagacacaagacccctg-catagttcagtgtatgttgttta-ttgtcttccttaggcctaacttctattccttcaacaaaga 35219099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 366
Target Start/End: Original strand, 35276491 - 35276712
Alignment:
Q  139 ccatccaagacacaagacccatgacatagttcactgaaagttgcttaattgtctaccttaggcctaacttctattccttcaagaaagagattcccctttg 238  Q
    |||| ||||||||||||||| |  ||||| ||| ||||   |||||||| || |  ||||||||||| || ||| |||||||||||||||  || || |     
T  35276491 ccattcaagacacaagacccgttgcatagctcagtgaattctgcttaatggtgttacttaggcctaatttatatcccttcaagaaagaga--ccactct- 35276587  T
Q  239 tctcaccagcctttatctcgataacactcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacctaccact 338  Q
    ||  |||| |||||||||| || ||| |||| || |||||||||  ||    |||||||||||||||||| ||||||||||||||| |||||| | | ||    
T  35276588 tccaaccaccctttatctccatcacattcatctgaacttcttcacattt---gcctgaattgaagaactcccccatctcaatctccaaccacccatctct 35276684  T
Q  339 tctccaactaggccgcggcaatcctact 366  Q
    ||||  |||||| ||  |||||||||||    
T  35276685 tctcacactaggacgttgcaatcctact 35276712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 35147339 - 35147404
Alignment:
Q  163 catagttcactgaaagttgcttaattgtctaccttaggcctaacttctattccttcaagaaagaga 228  Q
    |||||||||  ||| |||||||||| ||||  |||||||||||||||||||||||||| |||||||    
T  35147339 catagttcatggaatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaagaga 35147404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 35199907 - 35199972
Alignment:
Q  163 catagttcactgaaagttgcttaattgtctaccttaggcctaacttctattccttcaagaaagaga 228  Q
    |||||||||  ||| ||| |||||||||||  ||||||||| ||||||||||||||||||||||||    
T  35199907 catagttcatggaatgttacttaattgtcttacttaggcctgacttctattccttcaagaaagaga 35199972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 35281403 - 35281449
Alignment:
Q  278 cttcattttcaaggcctgaattgaagaactctcccatctcaatctcc 324  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  35281403 cttcatcttctaggcctgaattgaagaactctcccatctcgatctcc 35281449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 35189408 - 35189465
Alignment:
Q  285 ttcaaggcctgaattgaagaactctcccatctcaatctcccaccacctaccacttctc 342  Q
    |||||||| ||||||||||||||| |||||  |||||||| |||||||| ||||||||    
T  35189408 ttcaaggcttgaattgaagaactcccccattccaatctccaaccacctatcacttctc 35189465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 35248360 - 35248405
Alignment:
Q  278 cttcattttcaaggcctgaattgaagaactctcccatctcaatctc 323  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||||    
T  35248360 cttcattttctaggcctaaattgaagaactcccccatctcaatctc 35248405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 342
Target Start/End: Original strand, 35252128 - 35252230
Alignment:
Q  243 accagcctttatctcga---taacactcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacctaccactt 339  Q
    |||| ||||||||||||   ||||| |||| |||| |||||||| ||| | |||| ||||||||||||| || |||||||||||  |||||| | |||||    
T  35252128 accatcctttatctcgacattaacattcatttggatttcttcatattctatgcctaaattgaagaactccccaatctcaatctcaaaccacccatcactt 35252227  T
Q  340 ctc 342  Q
    |||    
T  35252228 ctc 35252230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 35216077 - 35216118
Alignment:
Q  290 ggcctgaattgaagaactctcccatctcaatctcccaccacc 331  Q
    |||||||||||||||||||||  |||||||||||| ||||||    
T  35216077 ggcctgaattgaagaactctctgatctcaatctccaaccacc 35216118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 34309350 - 34309394
Alignment:
Q  113 acttcaaatcttcaagcactattctaccatccaagacacaagacc 157  Q
    |||||||||||| ||||  |||||| |||||||||||||||||||    
T  34309350 acttcaaatcttgaagcggtattcttccatccaagacacaagacc 34309394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 366
Target Start/End: Original strand, 35200018 - 35200110
Alignment:
Q  274 acttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacctaccacttctccaactaggccgcggcaatcctact 366  Q
    |||||||||| |||   |||||||||||||||||| || || ||||||||| |||||| | | ||||||  |||||| ||  |||||||||||    
T  35200018 acttcttcatcttcttcgcctgaattgaagaactccccgatttcaatctccaaccacccatcgcttctcacactagggcgttgcaatcctact 35200110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 45531354 - 45531382
Alignment:
Q  77 tttaaacaagagtatgttacatactgaaa 105  Q
    |||||||||||||||||||||||||||||    
T  45531354 tttaaacaagagtatgttacatactgaaa 45531382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 331
Target Start/End: Complemental strand, 899933 - 899778
Alignment:
Q  179 ttgcttaattgtctaccttaggcctaacttctattccttcaagaaagagattcccctttgtctcaccagccttta---tctcgataacactcatatggac 275  Q
    |||||||||| ||  ||||||||||||||||||||||||||||||||| ||| |||||  | |  |||  ||  |   |||||| ||||||||| |||||    
T  899933 ttgcttaattttcctccttaggcctaacttctattccttcaagaaagaaatttcccttcttattgccactctccaatttctcgacaacactcatttggac 899834  T
Q  276 ttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacc 331  Q
    ||||||   |||||| | ||||||||| ||||||||||||||||||||| ||||||    
T  899833 ttcttctccttcaagtcttgaattgaataactctcccatctcaatctccaaccacc 899778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 17664665 - 17664594
Alignment:
Q  258 gataacactcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccacca 329  Q
    |||||||||||| ||||||||||||| ||  |||| |||||| ||||| |||||||||||||||||| ||||    
T  17664665 gataacactcatgtggacttcttcatctttgaggcttgaattaaagaattctcccatctcaatctccaacca 17664594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 19247068 - 19246997
Alignment:
Q  258 gataacactcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccacca 329  Q
    |||||||||||| |||| |||||||| ||  |||| |||||| ||||| |||||||||||||||||| ||||    
T  19247068 gataacactcatgtggatttcttcatctttgaggcttgaattaaagaattctcccatctcaatctccaacca 19246997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 226
Target Start/End: Complemental strand, 53924421 - 53924390
Alignment:
Q  195 cttaggcctaacttctattccttcaagaaaga 226  Q
    ||||||||||||||||||||||||||||||||    
T  53924421 cttaggcctaacttctattccttcaagaaaga 53924390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 363
Target Start/End: Complemental strand, 33138714 - 33138612
Alignment:
Q  261 aacactcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacctaccacttctccaactaggccgcggcaat 360  Q
    |||||||||| |||||||||||| || | ||| |||||||||||| | |||||||||||||||| |||||| | ||||||||  | |||| ||| |||||    
T  33138714 aacactcatacggacttcttcatctttagggcttgaattgaagaattttcccatctcaatctccaaccacccatcacttctcacagtaggacgctgcaat 33138615  T
Q  361 cct 363  Q
    |||    
T  33138614 cct 33138612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 38631950 - 38632027
Alignment:
Q  254 tctcgataacactcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacc 331  Q
    |||||||||||||||| |||| |||||||| || |||| ||||| |||||||||||||||| | ||||||| ||||||    
T  38631950 tctcgataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatatgaatctccaaccacc 38632027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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