View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16702_high_34 (Length: 358)
Name: NF16702_high_34
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_high_34 |
 | |
|
| [»] scaffold0197 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0197 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 23073 - 22729
Alignment:
| Q |
1 |
attcatgttttgtttcttcctttgatttgaagcttcgtgtttggagtgatgttaggattgttagaccttctggggttgtgttttctttcttgattgcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23073 |
attcatgttttgtttcttcctttgatttgaagcttcgtgtttggagtgatgttaggattgttagaccttctggggttgtgttttctttcttgattgcttg |
22974 |
T |
|
| Q |
101 |
tagggaaaggcttgttttagctggtgtttgtaattcaccaagtgggtctagtttcaatttgtgggaggttgatgaaaaaagtatggagatttgtgagatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22973 |
tagggaaaggcttgttttagctggtgtttgtaattcaccaagtgggtctagtttcaatttgtgggaggttgatgaaaaaagtatggagatttgtgagatt |
22874 |
T |
|
| Q |
201 |
ggtgttatgcctcatgatttgctttctagtttgtttgatggtgatgaggatgatagatttgctagcttgaagtgtgttgggttgggtgatcttatatatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22873 |
ggtgttatgcctcatgatttgctttctagtttgtttgatggtgatgaggatgatagatttgctagcttgaagtgtgttgggttgggtgatcttatatatg |
22774 |
T |
|
| Q |
301 |
ttttcaatgaggattatcataggatgtacccggcttgtgtctgtg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22773 |
ttttcaatgaggattatcataggatgtacccggcttgtgtctgtg |
22729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 21309458 - 21309114
Alignment:
| Q |
1 |
attcatgttttgtttcttcctttgatttgaagcttcgtgtttggagtgatgttaggattgttagaccttctggggttgtgttttctttcttgattgcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21309458 |
attcatgttttgtttcttcctttgatttgaagcttcgtgtttggagtgatgttaggattgttagaccttctggggttgtgttttctttcttgattgcttg |
21309359 |
T |
|
| Q |
101 |
tagggaaaggcttgttttagctggtgtttgtaattcaccaagtgggtctagtttcaatttgtgggaggttgatgaaaaaagtatggagatttgtgagatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21309358 |
tagggaaaggcttgttttagctggtgtttgtaattcaccaagtgggtctagtttcaatttgtgggaggttgatgaaaaaagtatggagatttgtgagatt |
21309259 |
T |
|
| Q |
201 |
ggtgttatgcctcatgatttgctttctagtttgtttgatggtgatgaggatgatagatttgctagcttgaagtgtgttgggttgggtgatcttatatatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21309258 |
ggtgttatgcctcatgatttgctttctagtttgtttgatggtgatgaggatgatagatttgctagcttgaagtgtgttgggttgggtgatcttatatatg |
21309159 |
T |
|
| Q |
301 |
ttttcaatgaggattatcataggatgtacccggcttgtgtctgtg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21309158 |
ttttcaatgaggattatcataggatgtacccggcttgtgtctgtg |
21309114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University