View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_high_35 (Length: 350)
Name: NF16702_high_35
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 336
Target Start/End: Complemental strand, 14222376 - 14222048
Alignment:
| Q |
8 |
tagcaaaggacgcatttatggatgcattaggtttggtacttttcgagactattgtgagagcacatcacatacttaaattccaaaaggactatttagtcta |
107 |
Q |
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| T |
14222376 |
tagcaaaagacgcatttatggatgcattaggtttggtacttttcgagactattgtgagagcacatcacatacttaaatttcaaaaggactatttagtcta |
14222277 |
T |
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| Q |
108 |
atttaaaatgaaggaaattgttggttacagcgaaaggtaatatcacgaagatttcacaaaccttgattttagtaaatatctaccctaaattacatccacg |
207 |
Q |
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| T |
14222276 |
atttaaaatgaaggaaattgttggttacagcgaaaggtaatatcaggaggatttcacaaaccttgattttagtaaatatctgccctaaattacacccacg |
14222177 |
T |
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| Q |
208 |
ccccccttttttccggtcaggaaaaaactgtattggctgaatgatttatcgggatacgctcggnnnnnnnttcctctagacaaataacattgctctaaaa |
307 |
Q |
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| T |
14222176 |
cccccctttttgccggtcaagaaacaactgtattggctgaatgatttatccggatacgctcggaaaaaaattcctctagacaaataacattgctctaaaa |
14222077 |
T |
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| Q |
308 |
tgaattgtaatctaattacatgaaaatct |
336 |
Q |
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| T |
14222076 |
tgaattgtgatctaattacatgaaaatct |
14222048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 14212072 - 14211972
Alignment:
| Q |
19 |
gcatttatggatgcattaggtttggtacttttcgagactattgtgagagcacatcacatacttaaattccaaaaggactatttagtctaatttaaaatga |
118 |
Q |
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| T |
14212072 |
gcatttatgtatgcatgagttttggtgctttaaaaatctattgtgggaacacatcacatatttaaattccaaaatgactatttagtctaatttaaaatga |
14211973 |
T |
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| Q |
119 |
a |
119 |
Q |
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| T |
14211972 |
a |
14211972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 10290957 - 10290844
Alignment:
| Q |
139 |
gaaaggtaatatcacgaagatttcacaaaccttgattttagtaaatatctaccctaaattacatccacgcccccc--ttttttccggtcaggaaaaaact |
236 |
Q |
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| T |
10290957 |
gaaagataatgtcacgaccatttcacaaaccttgattttagtaataatcttccctaatatacacccatgccccccctttttttccggccatgaaacaact |
10290858 |
T |
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| Q |
237 |
gtattggctgaatg |
250 |
Q |
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| T |
10290857 |
gtgttggctgaatg |
10290844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 52442758 - 52442681
Alignment:
| Q |
122 |
aaattgttggttacagcgaaaggtaatatcacgaagatttcacaaacc---ttgattttagtaaatatctaccctaaa |
196 |
Q |
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| T |
52442758 |
aaattgcttgttacagcgaaatgtaatgtcacgaggatttcacgaaccttatttattttagtaaatatctgccctaaa |
52442681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 33461164 - 33461242
Alignment:
| Q |
124 |
attgttggttacagcgaaa-ggtaatatcacgaagatttcacaaaccttgattttagtaaatatctaccctaaattaca |
201 |
Q |
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||||||||||||||||||| ||||| ||| |||| |||||| | || | |||||| ||||||||| |||||||||||| |
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| T |
33461164 |
attgttggttacagcgaaaaggtaacatcgcgaaaatttcaggagcccttattttaataaatatctgccctaaattaca |
33461242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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