View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_high_4 (Length: 609)
Name: NF16702_high_4
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 7 - 593
Target Start/End: Complemental strand, 5080063 - 5079476
Alignment:
| Q |
7 |
caaagggcacgatattcccacgagggggtaacatgcaaacaagcatcattttccattgttgtttgtgacacaaagatgaaagccccacaagnnnnnnnga |
106 |
Q |
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| T |
5080063 |
caaagggtacgatattcccacgagggggtaacatgcaaacaagcatcattttccattgttgtttgtgacacaaagatgaaagccccacaagtttttttga |
5079964 |
T |
|
| Q |
107 |
gcttcactctcaatgtgaccaaacaaacaccggatcacatgggtttttggtagtctttttgtaacataaggttacctattgtgggatgaaagcaaaggaa |
206 |
Q |
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| T |
5079963 |
gcttcactctcaatgtgaccaaacaaacaccggatcacatgggtttttgttagtctttttgtaacataaggttacctattgtgggatgaaagcaaaggaa |
5079864 |
T |
|
| Q |
207 |
tgaaaggttttaatacaaattgcattagtgtggaatgaaagaaacaataacaaagacaaaagcacctcttcaagtatcaaacaaattgatagagggggcc |
306 |
Q |
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| T |
5079863 |
tgaaaggttttaatacaaattgcattagtgtggaatgaaagaaacaataacaaagacaaaagcacctcttcaagtatcaaacaaattgatagagggggcc |
5079764 |
T |
|
| Q |
307 |
ttcaacacatnnnnnnntgggcgtggggtggtttgatatagtgtagtggagccaaccacaataaagctaagaataatatattttctaatgtgttggttat |
406 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5079763 |
ttcaacacatgggggggtgggcgtggggtggtttgatatagtgtagtggagccaaccacaataaagctaagaataatatattttctaatgtgttggttat |
5079664 |
T |
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| Q |
407 |
atatattggatgaggaac-attatatatccaatgatgaatccatctaattaattaataggtataaatgttgctnnnnnnnnnnnnctccctttctttcat |
505 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5079663 |
atatattggatgaggaacgcatatatatccaatgatgaatccatctaattaattaataggtataaatgttgctaaaaagaaaaaactccctttctttcat |
5079564 |
T |
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| Q |
506 |
aagcaaaaaagaatgaggaatccctccctcaaaatagactgatgggtcacgataacaacaatataaaaatattgatacatgaaatata |
593 |
Q |
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| T |
5079563 |
aagcaaaaaagaatgaggaatccctccctcaaaatagactgatgggtcacgataacaacaacataaaaatattgatacatgaaatata |
5079476 |
T |
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