View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16702_high_40 (Length: 340)

Name: NF16702_high_40
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16702_high_40
NF16702_high_40
[»] chr7 (6 HSPs)
chr7 (5-318)||(27597503-27597816)
chr7 (27-130)||(27597976-27598081)
chr7 (59-129)||(36675185-36675256)
chr7 (27-125)||(21416493-21416593)
chr7 (56-131)||(28445224-28445299)
chr7 (58-103)||(23578098-23578143)
[»] chr5 (6 HSPs)
chr5 (27-129)||(13112529-13112633)
chr5 (27-129)||(13042531-13042635)
chr5 (58-129)||(13042988-13043060)
chr5 (58-129)||(13112984-13113056)
chr5 (56-129)||(13042704-13042778)
chr5 (56-129)||(13112702-13112776)
[»] chr2 (3 HSPs)
chr2 (28-129)||(28226329-28226432)
chr2 (58-129)||(13792588-13792660)
chr2 (58-129)||(28226647-28226719)
[»] chr3 (8 HSPs)
chr3 (28-129)||(29795941-29796042)
chr3 (27-129)||(16143430-16143534)
chr3 (27-129)||(53595952-53596056)
chr3 (27-129)||(53596267-53596371)
chr3 (58-124)||(43978669-43978736)
chr3 (58-126)||(40195914-40195983)
chr3 (58-125)||(23162181-23162249)
chr3 (58-129)||(48127909-48127981)
[»] chr6 (3 HSPs)
chr6 (61-129)||(7301397-7301466)
chr6 (27-129)||(11637783-11637887)
chr6 (58-129)||(7301678-7301750)
[»] chr8 (4 HSPs)
chr8 (58-128)||(5981536-5981607)
chr8 (58-119)||(2954319-2954381)
chr8 (59-100)||(3670894-3670935)
chr8 (56-119)||(2954600-2954664)
[»] chr4 (9 HSPs)
chr4 (58-103)||(922437-922482)
chr4 (58-125)||(11307673-11307741)
chr4 (27-129)||(34946467-34946570)
chr4 (28-129)||(10396123-10396226)
chr4 (58-124)||(47680618-47680685)
chr4 (58-100)||(11197248-11197290)
chr4 (58-129)||(10396408-10396480)
chr4 (62-129)||(34946209-34946277)
chr4 (27-129)||(53468060-53468163)
[»] chr1 (4 HSPs)
chr1 (55-124)||(27686615-27686685)
chr1 (58-126)||(4392286-4392355)
chr1 (58-126)||(15327851-15327920)
chr1 (58-125)||(12466279-12466347)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 318
Target Start/End: Complemental strand, 27597816 - 27597503
Alignment:
Q  5 caatgagatggacatcatctctcaaaaccttaagacaacgagtttatggatttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggat 104  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| ||    
T  27597816 caatgagagagacatcacctctcaaaaccttaagacaacgagtttatggatttctctcttatatatccaacgtttgctccatttctaatcgatgtggaat 27597717  T
Q  105 atatcactcacacttaatttccaacggtagtagctgcatctcgaaattaacgatatttttcnnnnnnntattattgaaatcaatgatatggagtagtgaa 204  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||       ||||||||| |||||||||||||||| |||||    
T  27597716 atatcactcacacttaatttccaacggtagtaaccgcatctcgaaattaacgatatttttcaaaaaaatattattgatatcaatgatatggagtggtgaa 27597617  T
Q  205 ggtaagagatccttattgaaaatatcaacataaaactagtttacactaatgatgcacgcttaaacttaaacttactatccatagtctaacattgatgcag 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27597616 ggtaagagatccttattgaaaatatcaacataaaactagtttacactaatgatgcacgcttaaacttaaacttactatccatagtctaacattgatgcag 27597517  T
Q  305 ccagagtcggatct 318  Q
    ||||||||||||||    
T  27597516 ccagagtcggatct 27597503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 27598081 - 27597976
Alignment:
Q  27 caaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaattt 124  Q
    ||||||| |||||||| | |||||||| | || ||||||||||||||||||||||||  |||||||||||||||| || | |||||||||||||| ||||    
T  27598081 caaaaccctaagacaatgggtttatgggtctcctctcttatatatccaacgtttgctcaatttatagtcgatgtgagacattatcactcacacttgattt 27597982  T
Q  125 ccaacg 130  Q
    ||||||    
T  27597981 ccaacg 27597976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 36675256 - 36675185
Alignment:
Q  59 tctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaatttccaac 129  Q
    ||||||||||||||||||||| || |||||||||||||||||||| | ||||||||||| || |||| ||||    
T  36675256 tctcttatatatccaacgttttctccatttatagtcgatgtgggacattatcactcacatttgattttcaac 36675185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 21416493 - 21416593
Alignment:
Q  27 caaaaccttaagacaacgagtttatggat-ttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaattt 124  Q
    |||||||  |||||||||||||||||| | | | |||||||||| ||||| |||||| ||||||| || ||||||| | || ||||||||||||| ||||    
T  21416493 caaaacccaaagacaacgagtttatgggtctccgctcttatataaccaacttttgctccatttattgttgatgtggaacataatcactcacacttgattt 21416592  T
Q  125 c 125  Q
    |    
T  21416593 c 21416593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 28445224 - 28445299
Alignment:
Q  56 ttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaatttccaacgg 131  Q
    |||||||||||||||||||  |||||| || || |||||||||||||| | ||||||||||| || |||||||||||    
T  28445224 ttctctcttatatatccaatatttgctcca-ttctagtcgatgtgggacattatcactcacagttgatttccaacgg 28445299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 23578098 - 23578143
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtggga 103  Q
    |||||||||||||||||||||| || ||||| || |||||||||||    
T  23578098 ctctcttatatatccaacgttttctccatttctactcgatgtggga 23578143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 13112633 - 13112529
Alignment:
Q  27 caaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaattt 124  Q
    |||||||||||||||| | |||||||| | || ||||||||||||| || |||||||  |||| |||||||||||||||| |||||||||||||| ||||    
T  13112633 caaaaccttaagacaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtgggatattatcactcacacttgattt 13112534  T
Q  125 ccaac 129  Q
    |||||    
T  13112533 ccaac 13112529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 13042635 - 13042531
Alignment:
Q  27 caaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaattt 124  Q
    |||||||||||| ||| | |||||||| | || ||||||||||||| || |||||||  |||| |||||||||||||||| |||||||||||||| ||||    
T  13042635 caaaaccttaaggcaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtgggatattatcactcacacttgattt 13042536  T
Q  125 ccaac 129  Q
    |||||    
T  13042535 ccaac 13042531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 13043060 - 13042988
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaatttccaac 129  Q
    ||||||||||||||||| |||||||  |||| |||||||||||||| | |||||||||| ||| |||||||||    
T  13043060 ctctcttatatatccaatgtttgctctatttctagtcgatgtgggagattatcactcactcttgatttccaac 13042988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 13113056 - 13112984
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaatttccaac 129  Q
    ||||||||||||||||| |||||||  |||| |||||||||||||| | |||||||||| ||| |||||||||    
T  13113056 ctctcttatatatccaatgtttgctctatttctagtcgatgtgggagattatcactcactcttgatttccaac 13112984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 13042778 - 13042704
Alignment:
Q  56 ttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaac 129  Q
    |||||||||||||||| || ||||||| ||||| |||| ||||||| | || ||||||||||||| |||||||||    
T  13042778 ttctctcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttgatttccaac 13042704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 13112776 - 13112702
Alignment:
Q  56 ttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaac 129  Q
    |||||||||||||||| || ||||||| ||||| |||| ||||||| | || ||||||||||||| |||||||||    
T  13112776 ttctctcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttgatttccaac 13112702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 28226432 - 28226329
Alignment:
Q  28 aaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaatttc 125  Q
    |||||| |||||||| | |||||||| | || ||||||||||||||||||||| || ||||| |||||||||||||| | || ||||||||||| |||||    
T  28226432 aaaaccctaagacaatgtgtttatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgggacattaacactcacacttgatttc 28226333  T
Q  126 caac 129  Q
    ||||    
T  28226332 caac 28226329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 13792588 - 13792660
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatata-tcactcacacttaatttccaac 129  Q
    |||||||||||||| ||  ||| || ||||| |||| ||||||||| ||| |||||||||||| |||||||||    
T  13792588 ctctcttatatatcaaatatttcctccatttctagttgatgtgggacataatcactcacacttgatttccaac 13792660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 28226719 - 28226647
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaatttccaac 129  Q
    |||||||||||||||||  |||||  ||||| | ||||||||| |||| ||||| |||||||| |||||||||    
T  28226719 ctctcttatatatccaatatttgccccatttcttgtcgatgtgtgatattatcagtcacacttgatttccaac 28226647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 29796042 - 29795941
Alignment:
Q  28 aaaaccttaagacaacgagtttatggatttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttcc 126  Q
    |||||||||||| || ||||||||| || || |||||||||||| ||||||| ||| |||| ||||||||||| ||||| |||||| |||||| ||||||    
T  29796042 aaaaccttaagataatgagtttatgaatctc-ctcttatatatctaacgttttctttatttttagtcgatgtgagatataatcactaacacttgatttcc 29795944  T
Q  127 aac 129  Q
    |||    
T  29795943 aac 29795941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 16143534 - 16143430
Alignment:
Q  27 caaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaattt 124  Q
    |||||| ||||| ||| ||| |||||| | || ||||||||||||||||| |||||| ||||| |||  ||||||| | | |||||||||||||| ||||    
T  16143534 caaaactttaaggcaatgagcttatgggtctcgtctcttatatatccaacatttgctccatttctagcagatgtggaacattatcactcacacttgattt 16143435  T
Q  125 ccaac 129  Q
    |||||    
T  16143434 ccaac 16143430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 53596056 - 53595952
Alignment:
Q  27 caaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaattt 124  Q
    ||||||||||||  |||| |||||||| | || ||||||||||||||||| ||| ||  |||| ||||| |||||||| || ||||||| ||||| ||||    
T  53596056 caaaaccttaaggtaacgggtttatgggtctcctctcttatatatccaacattttctctatttctagtcaatgtgggacataatcactcgcacttgattt 53595957  T
Q  125 ccaac 129  Q
    |||||    
T  53595956 ccaac 53595952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 53596371 - 53596267
Alignment:
Q  27 caaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaattt 124  Q
    ||||||||||||  |||| |||||||| | || ||||||||||||||||| ||| ||  |||| ||||| |||||||| || ||||||| ||||| ||||    
T  53596371 caaaaccttaaggtaacgggtttatgggtctcctctcttatatatccaacattttctctatttctagtcaatgtgggacataatcactcgcacttgattt 53596272  T
Q  125 ccaac 129  Q
    |||||    
T  53596271 ccaac 53596267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 43978669 - 43978736
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaattt 124  Q
    ||||||||||||||||| |||| || ||||  |||||||||||||| || ||||||||||||| ||||    
T  43978669 ctctcttatatatccaatgtttcctccattcctagtcgatgtgggacataatcactcacacttgattt 43978736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 40195914 - 40195983
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttcc 126  Q
    |||||||||||||||||||||| || ||||  |||||||||||  | || ||||||||||||| ||||||    
T  40195914 ctctcttatatatccaacgtttcctccattcctagtcgatgtgaaacataatcactcacacttgatttcc 40195983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 23162249 - 23162181
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttc 125  Q
    ||||||||||| |||||||||| || ||||  || ||||||||||| || ||||||||||||| |||||    
T  23162249 ctctcttatatgtccaacgtttcctccattcctaatcgatgtgggacataatcactcacactttatttc 23162181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 48127909 - 48127981
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaac 129  Q
    |||||||||||||| ||||||| |  |||||||||| |||||| || || |||||||||| || |||||||||    
T  48127909 ctctcttatatatcaaacgtttccaccatttatagttgatgtgtgacataatcactcacatttgatttccaac 48127981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 7301397 - 7301466
Alignment:
Q  61 tcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaac 129  Q
    ||||||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||| ||||    
T  7301397 tcttatatatccaacgtttcctccatttctagtcgatgtgggacataatcactcacacttaattttcaac 7301466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 11637783 - 11637887
Alignment:
Q  27 caaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaattt 124  Q
    ||||| |||||||||| | |||||||| | || |||||||||||| ||| |||||||||| || |||||||||| ||| | |||||||||||||| ||||    
T  11637783 caaaatcttaagacaatgggtttatgggtatcctctcttatatattcaatgtttgcttcacttctagtcgatgttggacattatcactcacacttgattt 11637882  T
Q  125 ccaac 129  Q
     ||||    
T  11637883 tcaac 11637887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 7301678 - 7301750
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaac 129  Q
    |||| ||||||||| ||| ||| || ||||| |||||||||||||| || || |||||||||| |||||||||    
T  7301678 ctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaac 7301750  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 5981536 - 5981607
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaa 128  Q
    |||||||||||||||||||||| || ||||  |||||||||||||| || ||||||||||||| ||||||||    
T  5981536 ctctcttatatatccaacgttttctccattcctagtcgatgtgggacataatcactcacacttgatttccaa 5981607  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 2954319 - 2954381
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacactt 119  Q
    |||||||||||||||||| ||| || ||||  |||||||||||||| || |||||||||||||    
T  2954319 ctctcttatatatccaacattttctccattcctagtcgatgtgggaaataatcactcacactt 2954381  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 3670894 - 3670935
Alignment:
Q  59 tctcttatatatccaacgtttgcttcatttatagtcgatgtg 100  Q
    ||||||||||||||||||||| || ||||| |||||||||||    
T  3670894 tctcttatatatccaacgtttcctccatttctagtcgatgtg 3670935  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 2954600 - 2954664
Alignment:
Q  56 ttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacactt 119  Q
    |||||||||||||||||||| ||| || ||||  ||||| |||||||| || |||||||||||||    
T  2954600 ttctctcttatatatccaacattttctccattcctagtctatgtgggacataatcactcacactt 2954664  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 922482 - 922437
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtggga 103  Q
    ||||||| |||||| |||||||||||||||| ||||||||||||||    
T  922482 ctctcttctatatctaacgtttgcttcatttctagtcgatgtggga 922437  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 11307673 - 11307741
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaatttc 125  Q
    |||||| ||||||||||| ||| || ||||||||||||||||| || |  |||||||||||||||||||    
T  11307673 ctctctcatatatccaacatttcctccatttatagtcgatgtgagacacaatcactcacacttaatttc 11307741  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 34946467 - 34946570
Alignment:
Q  27 caaaaccttaagacaacgagtttatggatttct-ctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaattt 124  Q
    ||||||| ||||||| |  |||||||| | ||| |||||| |||||||||||||||| ||||| ||||||||||| || | |||||| ||||||| ||||    
T  34946467 caaaaccctaagacatcaggtttatgggtctcttctcttaaatatccaacgtttgctccatttctagtcgatgtgagacattatcac-cacacttgattt 34946565  T
Q  125 ccaac 129  Q
    |||||    
T  34946566 ccaac 34946570  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 10396226 - 10396123
Alignment:
Q  28 aaaaccttaagacaacgagtttatggat-ttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttc 125  Q
    |||||| |||| ||| | |||||||| | ||||||||||||||| |||| ||| || ||||| | ||||||||| || || ||||||||||||| |||||    
T  10396226 aaaaccctaaggcaatgggtttatgggtcttctctcttatatattcaacatttcctccatttcttgtcgatgtgagacataatcactcacacttgatttc 10396127  T
Q  126 caac 129  Q
    ||||    
T  10396126 caac 10396123  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 47680685 - 47680618
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaattt 124  Q
    ||||| ||||||| ||| |||| || |||||||| ||||||||||| || ||||||||||||||||||    
T  47680685 ctctcatatatattcaatgtttcctccatttataatcgatgtgggacataatcactcacacttaattt 47680618  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 11197290 - 11197248
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtg 100  Q
    |||||||||||||||||||||| || ||||| |||||||||||    
T  11197290 ctctcttatatatccaacgtttcctccatttctagtcgatgtg 11197248  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 10396480 - 10396408
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaac 129  Q
    |||||||||||||||||| ||| || ||||| ||||| || || || || ||||||||||||| |||||||||    
T  10396480 ctctcttatatatccaacatttcctccatttctagtcaatatgagacataatcactcacacttgatttccaac 10396408  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 34946209 - 34946277
Alignment:
Q  62 cttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaac 129  Q
    |||| |||| ||||||||||| |||||  ||| ||||||||| || ||||||||||||| |||||||||    
T  34946209 cttaaatattcaacgtttgctccatttcaagttgatgtgggacattatcactcacacttgatttccaac 34946277  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 53468060 - 53468163
Alignment:
Q  27 caaaaccttaagacaacgagtttatggatttctctctt-atatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaattt 124  Q
    ||||| ||||| |||| |||||||||| | || ||||| |||||| |||| |||||| ||||| || |||||||| || || ||||||||||||| ||||    
T  53468060 caaaagcttaaaacaatgagtttatgggtctc-ctctttatatattcaacatttgctccatttctaatcgatgtgagacattatcactcacacttgattt 53468158  T
Q  125 ccaac 129  Q
    |||||    
T  53468159 ccaac 53468163  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 27686615 - 27686685
Alignment:
Q  55 tttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaattt 124  Q
    ||||||||||||||||| || |||| || ||||  |||||||||||| | || ||||||||||||||||||    
T  27686615 tttctctcttatatatctaatgtttcctccattcctagtcgatgtggaacataatcactcacacttaattt 27686685  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 4392286 - 4392355
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttcc 126  Q
    |||| |||||||||||| |||| || |||| |||||||||||| || || ||||||||||||| ||||||    
T  4392286 ctctgttatatatccaatgtttcctccattcatagtcgatgtgagacataatcactcacacttgatttcc 4392355  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 15327920 - 15327851
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttcc 126  Q
    |||||||||||||| ||||||| || ||||  ||||||||||| || || ||||||||||||| ||||||    
T  15327920 ctctcttatatatctaacgtttcctccattcctagtcgatgtgagacataatcactcacacttgatttcc 15327851  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 12466347 - 12466279
Alignment:
Q  58 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttc 125  Q
    ||||| |||||||||||||||| || ||||| |||| ||||||||| || |||||| |||||| |||||    
T  12466347 ctctcgtatatatccaacgttttctccatttctagttgatgtgggacataatcacttacacttgatttc 12466279  T

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