View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_high_44 (Length: 320)
Name: NF16702_high_44
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 3162945 - 3162654
Alignment:
| Q |
19 |
ttaactacatattaataatttagaacaggtacttttaagnnnnnnnn--ccacataggtccttttaagttccattacgtgtgcaccgttacccttttcac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3162945 |
ttaactacatattaataatttagaacaggtacttttaagttttttttttccacataggtccttttaagttccattacatgtgcaccgttacccttttcac |
3162846 |
T |
|
| Q |
117 |
acattctgttacaaaaatgtacatgtgtttgttatgttaatgtgtcgtgtcatgaacaaagtttattctacgtgtacccctttctcatctcctaggtgtt |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3162845 |
acattctgttacaaaaatatacatgtgtttgttatgttaatgtgtc-----atgaacaaagtttattctacgtgtacccctttctcatctcctaggtgtt |
3162751 |
T |
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| Q |
217 |
tgttaggctatatgacttggaacaaatattgccctctgagaatttgtacattaggaggtgaatacgtctggggatacaaaatcaattcttcttctct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3162750 |
tgttaggctatatgacttggaacaaatattgccctctgagaatttgtacattgggaggtgaatacgtctggggatacaaaatcaattcctcttctct |
3162654 |
T |
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