View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16702_high_47 (Length: 314)
Name: NF16702_high_47
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_high_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 51052673 - 51052970
Alignment:
| Q |
1 |
atgaaatacccttgatgaaagtttttcatacagagaagctaaagtacttacagtttaaggcatttggaatttttgcagttacatcgtttttgcttcttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51052673 |
atgaaatacccttgatgaaagtttttcatacagagaagctaaagtacttacagtttaaggcatttggaatttttgcagttacatcgtttttgcttcttta |
51052772 |
T |
|
| Q |
101 |
gagtgttgtcctttaaccctgctttattttgagactgtgatctagggctaggagactcgtttctgaaggaaaacaaatgcaatcaaacacaacaaatgca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
51052773 |
gagtgttgtcctttaaccctgctttattttgagactgtgatctagggctaggagactcgtttctgaaggaaaacaaatgcattcaaacacaacaaatgca |
51052872 |
T |
|
| Q |
201 |
aattagtagagtaagagttcttactgtgaagcaaaattcaatcatagagtaagagataaaacagtctttttgaagaggaccgtataaatggacagatg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51052873 |
aattagtagagtaagagttcttactgtgaagcaaaattcaatcatagagtaagagataaaacagtctttttgaagagggccgtataaatggacagatg |
51052970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 294
Target Start/End: Complemental strand, 17759724 - 17759574
Alignment:
| Q |
138 |
tgatctagggctaggagactcgtttctgaaggaaaacaaatgcaatcaaacacaacaaatgcaaattagtagagtaagagttcttactgtgaagcaaaat |
237 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||||||||||||| |||| |||| || | | |||||||| |||||||||| ||||||| || || |
|
|
| T |
17759724 |
tgatctaggactagggaactcgtttctaaaggaaaacaaatgcattcaataacaaaaa--gaatattagtagt---agagttcttaatgtgaagtaagat |
17759630 |
T |
|
| Q |
238 |
tcaatcatagagtaagagataaaacagtctttttgaagaggaccgtataaatggaca |
294 |
Q |
| |
|
||||||||| |||||||||| ||||| || |||||||||||||| | |||||||||| |
|
|
| T |
17759629 |
tcaatcataaagtaagagat-aaacaatccttttgaagaggaccatttaaatggaca |
17759574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University