View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16702_high_56 (Length: 282)
Name: NF16702_high_56
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_high_56 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 35018856 - 35018602
Alignment:
| Q |
10 |
gcagagagattgatggtctatatgctgattatcttgaaactgtttttggaaaacctgttctgctttcaggtcctctgttacctgaggcaccaaaagctac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35018856 |
gcagagagattgatggtctatatgctgattatcttgaaactgtttttggaaaacctgttctgctttcaggtcctctgttacctgagccaccaaaagctac |
35018757 |
T |
|
| Q |
110 |
tttagaggagaaatggttaacatggcttaaggaattcaaacatggttctgtgattttttgtgcgtatggaagtgaaggtccattagaaacaaatcaattt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35018756 |
tttagaggagaaatggttaacatggcttaaggaattcaaacatggttctgtgattttttgtgcgtatggaagtgaaggtccattagaaacaaatcaattt |
35018657 |
T |
|
| Q |
210 |
caagagttgttacttggtcttgagttaacaggttttccatttcttgcagcactta |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35018656 |
caagagttgttacttggtcttgagttaacaggttttccatttcttgcagcactta |
35018602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 35011830 - 35011576
Alignment:
| Q |
10 |
gcagagagattgatggtctatatgctgattatcttgaaactgtttttggaaaacctgttctgctttcaggtcctctgttacctgaggcaccaaaagctac |
109 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| |||| |
|
|
| T |
35011830 |
gcagagaaattgatggactatatgctgattatcttgaaactgtttttggaaaacctgttctgctttcaggtcctttattacccgaggcaccaaaatctac |
35011731 |
T |
|
| Q |
110 |
tttagaggagaaatggttaacatggcttaaggaattcaaacatggttctgtgattttttgtgcgtatggaagtgaaggtccattagaaacaaatcaattt |
209 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| || || ||||||||| |
|
|
| T |
35011730 |
tttagaggaaaaatggttaacatggcttgagggattcaaacatggttctgtggttttttgtgcgtatggaagtgaaggcccactacaacataatcaattt |
35011631 |
T |
|
| Q |
210 |
caagagttgttacttggtcttgagttaacaggttttccatttcttgcagcactta |
264 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35011630 |
caagagttgttacttggtcttgaattaacaggttttccatttcttgcagcactta |
35011576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 35033813 - 35034056
Alignment:
| Q |
19 |
ttgatggtctatatgctgattatcttgaaactgtttttggaaaacctgttctgctttcaggtcctctgttacctgaggcaccaaaagctactttagagga |
118 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| | || ||||||| |
|
|
| T |
35033813 |
ttgatggaccatatgctgattatattgaaactgtttttggaaaacctgttctgctttcaggtcctgtgttacctgagccaacaaatacaacactagagga |
35033912 |
T |
|
| Q |
119 |
gaaatggttaacatggcttaaggaattcaaacatggttctgtgattttttgtgcgtatggaagtgaaggtccattagaaacaaatcaatttcaagagttg |
218 |
Q |
| |
|
|||||| | |||||||||||| ||| || ||||||||||| |||||||||| ||||||||||||||||||||||||| |||||| |||| ||||||| |
|
|
| T |
35033913 |
aaaatggatttcatggcttaagggatttgaaaatggttctgtggttttttgtgcatatggaagtgaaggtccattagaaaaaaatcagtttctagagttg |
35034012 |
T |
|
| Q |
219 |
ttacttggtcttgagttaacaggttttccatttcttgcagcact |
262 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35034013 |
ttgcttggccttgagttaacaggttttccatttcttgcagcact |
35034056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 35026814 - 35027049
Alignment:
| Q |
29 |
atatgctgattatcttgaaactgtttttggaaaacctgttctgctttcaggtcctctgttacctgaggcaccaaaagctactttagaggagaaatggtta |
128 |
Q |
| |
|
||||||||| | ||||| || | ||| |||||||||| ||| |||||||||||| |||||||||| |||||||| | |||||||| || |||||| | |
|
|
| T |
35026814 |
atatgctgaatttcttggaaatttttatggaaaaccttatctactttcaggtcctttgttacctgaaacaccaaaaacaactttagatgaaaaatgggaa |
35026913 |
T |
|
| Q |
129 |
acatggcttaaggaattcaaacatggttctgtgattttttgtgcgtatggaagtgaaggtccattagaaacaaatcaatttcaagagttgttacttggtc |
228 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| | |||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||||| |
|
|
| T |
35026914 |
tcatggcttaagggattcaaacctggttctgtggtgttttgtgcatatggaagtgaaggtccattagaaaaaaatcagtttcaagagttgttgcttggtc |
35027013 |
T |
|
| Q |
229 |
ttgagttaacaggttttccatttcttgcagcactta |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
35027014 |
ttgagttaacaggttttccatttcttgcagcactta |
35027049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 34998343 - 34998174
Alignment:
| Q |
10 |
gcagagagattgatggtctatatgctgattatcttgaaactgtttttggaaaacctgttctgctttcaggtcctctgttacctgaggcaccaaaagctac |
109 |
Q |
| |
|
||||||| ||||||||| | |||||||| ||||| |||||||||| || |||||||||||||||||||||||| | |||||||||||||||||| |||| |
|
|
| T |
34998343 |
gcagagaaattgatggtttgtatgctgaatatctacaaactgttttgggtaaacctgttctgctttcaggtcctttattacctgaggcaccaaaatctac |
34998244 |
T |
|
| Q |
110 |
tttagaggagaaatggttaacatggcttaaggaattcaaacatggttctgtgattttttgtgcgtatggaag |
181 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| |||||||||||||| ||| ||| |||||| |||||||| |
|
|
| T |
34998243 |
tttagaggaaaaatggttaac--ggcttaagggattcaaacatggtttcgtggtttattgtgcatatggaag |
34998174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University