View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_high_58 (Length: 279)
Name: NF16702_high_58
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_high_58 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 10714531 - 10714277
Alignment:
| Q |
15 |
agggatcaattatataacaactcacactgcagatatcatattccatgtgagatgtcctaaggttaaccaagtcccttctaacaacactgtcaatagccgg |
114 |
Q |
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| T |
10714531 |
agggatcaattatataacaactcacactgcagatatcatattccatgtgagatgtcctaaggttaaccaagtcccttctaacagcactgtcaatagccgg |
10714432 |
T |
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| Q |
115 |
accgacattcccttgcactgtcaatacaaatatcataaaggcagaaataagattactatttgcatcaacaacatcataacaaccaagaaacatgcaacgt |
214 |
Q |
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| T |
10714431 |
acc-acattcccttgcactgtcaatacaaatatcatcaaggcagaaataagattactatttgcatcaacaacatcataacaaccaagaaacatgcaacgt |
10714333 |
T |
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| Q |
215 |
aaagttcatgataattacataaacacgtcacactatgaataaaaccatacctttgc |
270 |
Q |
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| T |
10714332 |
aaagttcatgataaacacataaacacgtcacactatgaataaaaccatacctttgc |
10714277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 16421777 - 16421705
Alignment:
| Q |
28 |
ataacaactcacactgcagatatcatattccatgtgagatgtcctaaggttaaccaagtcccttctaacaaca |
100 |
Q |
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| T |
16421777 |
ataacaactcacactgcatgcatcaaattccatgtgaaacgtcctcaagttaaccaaatcccttttcacaaca |
16421705 |
T |
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